GgaINT0123095

From VastDB

Intron Retention

Gene
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NLY7]
Coordinates
chr1:149566861-149571329:-
Coord C1 exon
chr1:149571066-149571329
Coord A exon
chr1:149566915-149571065
Coord C2 exon
chr1:149566861-149566914
Length
4151 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TCGCTGCCTGTTATTAAAAGACT
3' ss Score
2.9
Exon sequences
Seq C1 exon
GTGTGCAGGGAGTTCCAGAGGGGAAACTGTGCGCGTGGAGAGACTGATTGCCGCTTTGCACATCCGGCAGACAGCACAATGATTGACACAAACGACAACACCGTAACCGTGTGTATGGATTACATAAAAGGTCGTTGCATGAGGGAGAAATGCAAGTATTTTCACCCTCCTGCACATTTGCAGGCCAAAATCAAAGCGGCGCAACATCAAGCTAACCAGGCTGCAGTGGCAGCCCAGGCAGCTGCGGCAGCTGCGACTGTGATG
Seq A exon
GTAAGTGCTGGCATATATGGCTGCTTTTCTTGACAGAAGCTCTTTGATGCCTATTTTGCTTCGATATAATGCTATTTGCTTATACTTTATTTTCCCTTTTGCTATTTTTTTCTTTTTTTTCTTTTTTTTTGGTAAAAGATAAGAATTTTTAAAATTACTACTGTTGCTTGATGGGAGGAAGCACTCTTTTTCATTATTCTCTTATTTTAATGCTGTATTTCTATCCAAGACAGTGAAGCAAATGACACTCTATACCACTTCTGTTCTCTGCCTTGATTATGTGTTAAATTTGCCCCTAGTATTTCCAAACAGAAATAAAACTGTTCAGTGTCCCCTGGAAAATAGGGGTCGATACGCTGGTTTAACTCTCTGACAACAGTTAGACATGTGGAAATGTGGAAGAAAAGTAAGAAAAGCAAAGAGGTGGTTTTTGCTTCAGGTTAGTACTAGAAGTGAAACATGTTAAGATTCAGTTCACCCCACTTTAAATGCCCTTCAGTTAAGTAGAGCCTAACCCAGCCACCTTCGTTTCACTCTATGGACAGTGGAGAAAACCCAGCACGTTCATCTACACTGTTTATCTGATTCATCACCATTGGTGCCTGTCTGAGGGGGAGGAAGAATTATCCTCTGGAGATAGATGGCTTTCCTCACTGCCTAAGAAATGCTGACTGTATCTTCTTGAACTTTGGCTAAGGCCAATGAGTCTCATACTAAGAGGCCTTTCTTTCCCCTCCTACTGACAGGGCAAGTCCATTGAATCTCTGTGCTACCATTTTTTTTTATTTTAGCACAACAGGGTTTAAAAGTAGTAAACCAAAATGGGAATAATTAAGAAAAAGCAGAGTAAGTTTGGTCATAATTTCTATTTTCAGAAATTTGAAAGCTGTTCGAACAAGGCAGCCCATCCATTTACCAATGTTGGTTATCTCTTATGGTTGCTACCAGGAAAGTTGTTAAATTTAAAGAAGTGGTATTGATACAGTTAAAGAAATCAAGCGTGCAGGATTTGACTTGGGAGACAAAACTGCTGGCAGAAAATCAAAGAATCGTTGTCCTCATTGCTGGCGCTGGGTGAATAATTAAGCAGATGCAGTTTGTGGACTTGTGGGCAGTGCATACAATAGTTATAGACAATATAGTTATTCTTTGAGTAAGGAGCCTACCAGAACCACAATACAATACAGTATATAACTACCCCATGCTATTGTATTTAGCAAATTAGCAAAGAGCAGACTTTCTGAGGAACAAAGGGTAAGTTATGCAAGTAAATAAATCTCTAACAGAAGAAAAATTTTAGTTTTTTTTTTTTGCACTTCAGTAATGGTTGGGCATATATCCTGTCATTTTAAATAAACCATGTTAGCCTTGAAGCGAGATGAGGAATCTTTGGGAACACCAAATTGAAATTCTAATGTCACAAGGGAAGAAGTCTGGGAGCTATAATTCTAGGTAACTTTTTACAGAAAAATATAGAAAATACTTTAATATTTAGGCTATCAAACAGAAGAGGTTATTTTCAATCTAACTATTTTTTACTTAACGTAGATTTGAAAGAATAAGATAAAGTGAATGAAAAATCACCAGAATGACAACAGCAACAAAAAAGTGGTAGAAAAGATGCACTCCTGCAAGCTACCCAAGAATGAACAAGAAAAAGCAGTTGGATCTAGAGATCAAACGTAAAGCAGTAATACAAACACTTACCTGTAGGGCTCACTTAGAGGTTGTTGCCAGGTTGAATTGTAAGAGGTCTTCCTTCCTGAGGGAAATATCTGCACTGCTTTGGCCCAGAGGGTTTTTTTTCTAGGCAAGCGTTGTGGACTTTATTGTAGTAGACATTGTATTGTAGGAGACATTGTAGTTAGACCTTGGAGGACCATTGAAGGTCAATGGAGACTACCATCTGGGACCATAAAATGCCCTGCCTGTATTTTCATACACTAACAATCAGGAACATTTACTCAGATGTCCTAAGTGACCTCATACTTTGAAGTAAAAAGAAAGGGGAAAAACACTGAATAAGGTACGAACCATATATAGCTTATATCCTAAATACATTAGAAGACAGTCAGCGGTCATTATATTCAGGGAGCCCCAGCTATTCATGTACTGCATCAAAAAACATAGAAAGTCACAGAGGAATGTACAGACACCTAAACTAAAATGTGAATTGATAGTTGAGATTGGAAGGGACCTTGAGATTGTCTAGTCTACCTCCCTGCTCTGGTTGGATGGCTCAAGCAGACAGCCCAGGATTGTGCCTGGTTGGCTTTTGAATTTCTCCAAGAATAGAGACTCCATAACTTCTCTAATGCCTCTAGGTTAAACTTTGTCTGGAAGGCAAAAGGAAAGCCAGCAAATACTTCCAAGTGGGGAGGTAAGGGTCAGAAGACCGTAGAGAGGATGTGGAGAAAGGTAGTCATTACAGAGATAACGAGTGAGGACAAATAATACAGGTACTGGATTATAGAGGCAATTAACTGAAATGCTTCACTCTTATTGATGTTGGTTTAAATTTATGGGCTTCGTCATCACATAATGCTGAATTCAGTTGTAATACTTAACCTACACATAGACTTCCATCAGTGGTGGATGCAGAGGGTCTGAGGTTCTGTTAGCGTAGCCAAGGTACCATAACATCAGCTGCGCAGCACTCTGTGTGAATGCAGGAAGGCTATCCACATCCTCACACTGCACCAGATGTTTTTTCTTATAGCTGAGTCTTGACCCTCTTTTTCTTATAGTTGAGTCAGACTACACATCAGGGAAAATAATCCAGAAGTGTGCTGCAGGATAGATGGGGAGTATGCTGGGAAGCCTCATGCAAGGTAGCTGCAAAAGGACTGGGAACGAAGACAGCAAAGGCTGTCCTGCAAAATACCCTGTTGGCGTTAGCTAATACCATGACTACAAGCTGTTCGTAAGGCATTTTGTACCTTGTCCTCTTTTTTAGACTTTTGTTCCCTATTTCCACATACTGATGTCAAGAGAGACATAATCTGCGTATCTGGAAAGAAAGGTTAAATATCAGTGAATGCTTTGAAAAAAAAAAGGGGAAAATTCTGATTTATGAGTAAATCATCCTTGCTGTCTAAAGGTTTGCAAGAATAATTTACAGTACAAAATTTGAAAGAAATATGTGATCTTTTTTTTTTTTTTTTAAAAGAATATCATCATATCAACCACAGGTTTAATCTTACAGTGAAAATATACAACAATATATATGTCTATGTACTATGCCTACATATTTTCTTTAAAATTTTTATGATGCTAAACCGGTATTATGAGTCATATTTCAGTGTTTAATACTGCTAGGAGCGGTATTTTTACTCCCTGCTCCCAAAGCTGGTACTGTAAGTCGTAGTGAAATTTAGAGAACGTGTTTCAAATTCTGATAGGCTGTTGGTTTTTTTCCTCACAATGTAATGTGGTAAGTTGCAAGGGAAAAAAAAAAACAAACAAACTACAAAAATGACCCGCCTTTAGGGAAATCTATAAGGAATTAATGATAAGTTAGTGCAACGGGACGTGTTATCTATTCCGCATTGGAAAAGGAGAACCTGTCTCATTTGGAACCCCAGATCTGTTGGGTTACGCACTTCTGTTGCCTAAGCCCCTCTCCTTGGAAGCACGAATATTGGGAGCGCTTGTGATGCGTTACGTCTTTCAGTAGTGCTTTTGATTGGGACGTGCAGCATTCCAAATTGAATTGCACACTTGGGAATCTGGTTTGGCTAACTTATCAGAAATTCTTGTAGGAGTATCCTTAAAACTTTCCGCATCTCTGTGAAGTGTTGATAAAATGCTTTATAGTGTCTGCAAGCTGCTGTTTTACTCAACTTTCCTGAATTTCAAACATCTATATTTTACTCTCTTATATGCTTTTAACTAAGGTATAGTAGATGCATTTTTGCTTCAGTACTAATTCGAAATGTAATATTCATTTCTTTAGAAGACATTTTTGTTGTTGTGCATGCCTAGTGTTTTGTATGTTGTATATTGCATTCAGAATATTTTTTTCCTTCTCACCTATCCACAATGCAATGCCGTTCCCATGATGCACCTCTGCTTGCTGTTTACCTGTATGTTAATTCGCTTGAATCCCATTGGCCCACTGCCATCATGTGCTCGCTGCCTGTTATTAAAAG
Seq C2 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCAACTGTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890:ENSGALT00000030196:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion

No structure available

Features
Disorder rate:
C1=NA A=NA C2=NA
 


Domain overlap (PROSITE):

Info
C1:
NA
A:
NA
C2:
NA
Domain overlap (PFAM):

Info
C1:
NA
A:
NA
C2:
NA

Degree:
NA
Betweeness:
NA
Associated events
Conservation
Human:
ALTERNATIVE
HsaINT0100449
Mouse:
ALTERNATIVE
MmuINT0096306
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Annotated function
There are 0 annotated functions for this event


GENOMIC CONTEXT

UCSC image

INCLUSION PATTERN