HsaEX0038120

From VastDB

Exon Skipping

Gene
Description
muscleblind-like splicing regulator 2 [Source:HGNC Symbol;Acc:16746]
Coordinates
chr13:98009736-98018807:+chr13:97357482-97366553:+
Coord C1 exon
chr13:98009736-98009889chr13:97357482-97357635
Coord A exon
chr13:98017390-98017425chr13:97365136-97365171
Coord C2 exon
chr13:98018713-98018807chr13:97366459-97366553
Length
3636 bp
Sequences
Splice sites
3' ss Seq
CCACCATTGCATGACATCAGGGT
3' ss Score
3.57
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GCCTTTCCCCCTGGTGCTCTTCATCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTACCAGCGCGGTCTTTAACCCCAGCGTCTTGCACTACCAGCAGGCTCTCACCAGCGCACAGTTGCAGCAACACGCCGCGTTCATTCCAACAG
GCCTTTCCCCCTGGTGCTCTTCATCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTACCAGCGCGGTCTTTAACCCCAGCGTCTTGCACTACCAGCAGGCTCTCACCAGCGCACAGTTGCAGCAACACGCCGCGTTCATTCCAACAG
Seq A exon
GGTCAGTTTTGTGCATGACACCCGCTACCAGTATTG
GGTCAGTTTTGTGCATGACACCCGCTACCAGTATTG
Seq C2 exon
TACCCATGATGCACAGCGCTACGTCCGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTCCCCTTCGCAGCAACAGCCACAGCCAATCAG
TACCCATGATGCACAGCGCTACGTCCGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTCCCCTTCGCAGCAACAGCCACAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139793_MULTIEX2-1/2=C1-2
Average complexity
C2C2
Mappability confidence:
100%=100=%
Protein Impact
Alternative protein isoforms (Ref)

No structure available

Features
Disorder rate:
C1=0.567 A=0.269 C2=0.266
 

Domain overlap (PROSITE):

Info
C1:
PS50310=ALA_RICH=PD(0.1=0.0)
A:
NO
C2:
NO
Domain overlap (PFAM):

Info
C1:
NO
A:
NO
C2:
NO

Degree:
NA
Betweeness:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTGCACTACCAGCAGG
R:
TTGTTGCTGCAGAGACAGTGG
Band lengths:
116-152
Annotated function
There are 1 annotated functions for this event
PMID: 21454535
This event
Inferred from MBNL1 ortholog: The exon 7 region enhances MBNL1-MBNL1 dimerization properties


GENOMIC CONTEXT

UCSC image

INCLUSION PATTERN