HsaINT0081107

From VastDB

Intron Retention

Gene
Description
insulin receptor [Source:HGNC Symbol;Acc:6091]
Coordinates
chr19:7150508-7152938:-chr19:7150497-7152927:-
Coord C1 exon
chr19:7152737-7152938chr19:7152726-7152927
Coord A exon
chr19:7150544-7152736chr19:7150533-7152725
Coord C2 exon
chr19:7150508-7150543chr19:7150497-7150532
Length
21932193 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CGTTGGTTTTGTTTCCACAGAAA
3' ss Score
9.85
Exon sequences
Seq C1 exon
GGCTGAAGCTGCCCTCGAGGACCTGGTCTCCACCATTCGAGTCTGAAGATTCTCAGAAGCACAACCAGAGTGAGTATGAGGATTCGGCCGGCGAATGCTGCTCCTGTCCAAAGACAGACTCTCAGATCCTGAAGGAGCTGGAGGAGTCCTCGTTTAGGAAGACGTTTGAGGATTACCTGCACAACGTGGTTTTCGTCCCCAG
GGCTGAAGCTGCCCTCGAGGACCTGGTCTCCACCATTCGAGTCTGAAGATTCTCAGAAGCACAACCAGAGTGAGTATGAGGATTCGGCCGGCGAATGCTGCTCCTGTCCAAAGACAGACTCTCAGATCCTGAAGGAGCTGGAGGAGTCCTCGTTTAGGAAGACGTTTGAGGATTACCTGCACAACGTGGTTTTCGTCCCCAG
Seq A exon
GTCAGGACTTGGCGCTGGGCTCTCTTAGTGGGTGCCAATTGGCTTGGTGTTGGTGGAAGGTCATTACTTAGGGACCGAGAGGTAGTGGGACCCAGAGACGGCAGAAGGGTGGGTGGAGTCTGAATGGAGCCCTTTCCTGGGTGGAGGAAGAGATCTTGCAGTTTCGAAATTTCGAGGGGAATTTTATCAGGAAGAGCAAATAATCGCACAAAAGGGGAAAAATGGACAAAACTCAGCATTTGCCTTTCTTACCTCTCCTGAGCTGGTCTCCACGTGAGTTCCAAAACAAACTCCGTTAGACGATTAACATTTTTTTTTTTCTCTCTCTCTCTTTTTTTTTTTTTTTTGACAGAGTCTCACTCTATCGTCCAGGCTGGAGTGCGGTGGTGCGATTTCAGCTCACCCTTTCCGGGTTCGAGTGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCGCAGCACCACGCCCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCTAGGCTGGTCTCTAACCCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAGAGTGCTGGGATTATAGGTGTGAGCCACCGTGCCTGGCCGTGATTATTGAGGCTTTAGCTGAGCGCAGTGGTGTAAGCCTGTGGTCCCAGCTAGTTGGGAAGCCGAGGTGGTAGGGTTGCTTGAGGCCAGCCTGGGCAACATAATGAGACCCCATCGCTACCAAAAAAAAAAAAAAACAGTTTAAAAATTAGTCAGGCATGGTAATGCATGTCTGAACTCCTAGCCCATGGGGAGGCTGAGAAAGAAGGATCACAAGAGGCCAGGAGATGGAGGCTACGATAAGCGATGATGGCGCCACTGCGCTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCTAAAAAAAAATTAAAAGTATCTGTTCAGATGTTTACCAATGCTATTCATCCGAGCAGACTTTTCTCCCAGAACCACCAGTGTGTAAGAATCCTCTTTTTTTTTTTTCTTTTCTTTTTCTTTTTTTGTTGCATGTTTCCCCTATGACCCTGAGTCCAAAAGAATGTTCAGGGGGACAGCCAAGGCTTCAAAGTGGTTACTGTTTCACCTGTTACAAACAAAATGTTGGCTAGGCACAGTGGCTCACTCGTGTAATCCCAGCACTTTGGGAGGCCGAAGTGGGAGAATCAGTTGAGGCCAAAGGTGGAGACCAGCCTGAGCAACAGAGTGAGACCCTATCTCTACTAAAAAAGGAAAAAAAAAAAAAAAATAGCCAGACATGTTGGTGCATGCCTTGTAGTCCCAGCTACTCCGGAGGCTGAGGCGGGAGAATTGCTGGAGCACAGGAGTTGGAGGCTGCTGTGAGCTATGATGGCACCATTGCACTCCAGCCTGGGCAACAGAGCAAGACCCTGTCTCAAAAAGGAAGGAAGGGAAAAAAAGAAAGAAAGAAAGGAATGGAGGGAGGGAGGGAAAGAGGAAGGAAGGAAGAGAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGGAAAGAGAGAAAGAAAGGACAGAGAAAGGAAGGGGGCAAGGGAGGGAGAGAGGAGGGAAGGAAGGAAGGAAAAAAGGAAAAGAAAGAAAAGAAAGAGAAAGAAAATGAAAAAAAGAAGGAAGGAAAGAGAAAGAAAGCAAATGAAGGAAGGAAAGAGGGAAAAAGAGAGAAAGAAAGTAAAAGAGGAAAGAAGGAAGGAAGGAGAGAGAGGGAGAGAGAAAAGAGAAAGAGAAAAGAAAAGGAGAAAGAGGAAAGAAACCAGAAAGAGAGAGAGAAAGAAGAAAGAAGGGAAAGAAAAGAAAAATTCTGCCAGACTTGGAGAAGTGGCTGAGTCAGTTGTGATGTCCACATGTAGTCACGTTTGACATCCCAGGGCCACCTCAGCAGGCCGTCTCTGGGGAGAATTTTCTCTGATTTCTTCCCCTTCCCTTGCTGGACCCCTGCACCTGCTGGGGAAGATGTAGCTCACTCCGTCTAGCAAGTGATGGGAGCGAGTGGTCCAGGGTCAAAGCCAGGGTGCCCTTACTCGGACACATGTGGCCTCCAAGTGTCAGAGCCCAGTGGTCTGTCTAATGAAGTTCCCTCTGTCCTCAAAGGCGTTGGTTTTGTTTCCACAG
GTCAGGACTTGGCGCTGGGCTCTCTTAGTGGGTGCCAATTGGCTTGGTGTTGGTGGAAGGTCATTACTTAGGGACCGAGAGGTAGTGGGACCCAGAGACGGCAGAAGGGTGGGTGGAGTCTGAATGGAGCCCTTTCCTGGGTGGAGGAAGAGATCTTGCAGTTTCGAAATTTCGAGGGGAATTTTATCAGGAAGAGCAAATAATCGCACAAAAGGGGAAAAATGGACAAAACTCAGCATTTGCCTTTCTTACCTCTCCTGAGCTGGTCTCCACGTGAGTTCCAAAACAAACTCCGTTAGACGATTAACATTTTTTTTTTTCTCTCTCTCTCTTTTTTTTTTTTTTTTGACAGAGTCTCACTCTATCGTCCAGGCTGGAGTGCGGTGGTGCGATTTCAGCTCACCCTTTCCGGGTTCGAGTGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGCGCAGCACCACGCCCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCTAGGCTGGTCTCTAACCCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAGAGTGCTGGGATTATAGGTGTGAGCCACCGTGCCTGGCCGTGATTATTGAGGCTTTAGCTGAGCGCAGTGGTGTAAGCCTGTGGTCCCAGCTAGTTGGGAAGCCGAGGTGGTAGGGTTGCTTGAGGCCAGCCTGGGCAACATAATGAGACCCCATCGCTACCAAAAAAAAAAAAAAACAGTTTAAAAATTAGTCAGGCATGGTAATGCATGTCTGAACTCCTAGCCCATGGGGAGGCTGAGAAAGAAGGATCACAAGAGGCCAGGAGATGGAGGCTACGATAAGCGATGATGGCGCCACTGCGCTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCTAAAAAAAAATTAAAAGTATCTGTTCAGATGTTTACCAATGCTATTCATCCGAGCAGACTTTTCTCCCAGAACCACCAGTGTGTAAGAATCCTCTTTTTTTTTTTTCTTTTCTTTTTCTTTTTTTGTTGCATGTTTCCCCTATGACCCTGAGTCCAAAAGAATGTTCAGGGGGACAGCCAAGGCTTCAAAGTGGTTACTGTTTCACCTGTTACAAACAAAATGTTGGCTAGGCACAGTGGCTCACTCGTGTAATCCCAGCACTTTGGGAGGCCGAAGTGGGAGAATCAGTTGAGGCCAAAGGTGGAGACCAGCCTGAGCAACAGAGTGAGACCCTATCTCTACTAAAAAAGGAAAAAAAAAAAAAAAATAGCCAGACATGTTGGTGCATGCCTTGTAGTCCCAGCTACTCCGGAGGCTGAGGCGGGAGAATTGCTGGAGCACAGGAGTTGGAGGCTGCTGTGAGCTATGATGGCACCATTGCACTCCAGCCTGGGCAACAGAGCAAGACCCTGTCTCAAAAAGGAAGGAAGGGAAAAAAAGAAAGAAAGAAAGGAATGGAGGGAGGGAGGGAAAGAGGAAGGAAGGAAGAGAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAGGAAAGAGAGAAAGAAAGGACAGAGAAAGGAAGGGGGCAAGGGAGGGAGAGAGGAGGGAAGGAAGGAAGGAAAAAAGGAAAAGAAAGAAAAGAAAGAGAAAGAAAATGAAAAAAAGAAGGAAGGAAAGAGAAAGAAAGCAAATGAAGGAAGGAAAGAGGGAAAAAGAGAGAAAGAAAGTAAAAGAGGAAAGAAGGAAGGAAGGAGAGAGAGGGAGAGAGAAAAGAGAAAGAGAAAAGAAAAGGAGAAAGAGGAAAGAAACCAGAAAGAGAGAGAGAAAGAAGAAAGAAGGGAAAGAAAAGAAAAATTCTGCCAGACTTGGAGAAGTGGCTGAGTCAGTTGTGATGTCCACATGTAGTCACGTTTGACATCCCAGGGCCACCTCAGCAGGCCGTCTCTGGGGAGAATTTTCTCTGATTTCTTCCCCTTCCCTTGCTGGACCCCTGCACCTGCTGGGGAAGATGTAGCTCACTCCGTCTAGCAAGTGATGGGAGCGAGTGGTCCAGGGTCAAAGCCAGGGTGCCCTTACTCGGACACATGTGGCCTCCAAGTGTCAGAGCCCAGTGGTCTGTCTAATGAAGTTCCCTCTGTCCTCAAAGGCGTTGGTTTTGTTTCCACAG
Seq C2 exon
AAAAACCTCTTCAGGCACTGGTGCCGAGGACCCTAG
AAAAACCTCTTCAGGCACTGGTGCCGAGGACCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171105-INSR:NM_000208:10
Average complexity
IR-CIR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion

No structure available

Features
Disorder rate:
C1=NA A=NA C2=NA
 


Domain overlap (PROSITE):

Info
C1:
NA
A:
NA
C2:
NA
Domain overlap (PFAM):

Info
C1:
NA
A:
NA
C2:
NA

Degree:
NA
Betweeness:
NA
Associated events
Conservation
Mouse:
ALTERNATIVE
MmuINT0082402
Chicken:
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Annotated function
There are 0 annotated functions for this event


GENOMIC CONTEXT

INCLUSION PATTERN