BtaALTD0013174-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000006187 | MFAP4
Description
Bos taurus microfibrillar-associated protein 4 (MFAP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001080217]
Coordinates
chr19:34686471-34686818:+
Coord C1 exon
chr19:34686471-34686488
Coord A exon
chr19:34686489-34686558
Coord C2 exon
chr19:34686636-34686818
Length
70 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AATTGCACCCCCCTTCTCAGGGC
3' ss Score
7.05
Exon sequences
Seq C1 exon
AAGAGATTCAACGGCTCG
Seq A exon
GTGAGCTTCTTCCGGGGCTGGAACGACTACAAGCTGGGCTTTGGCCGGGCTGACGGGGAGTACTGGCTGG
Seq C2 exon
GGCTCCAGAACATGCACCTGCTGACACTGAAGCAGAAGTACGAGCTGCGGGTGGACCTGGAGGACTTTGAGAACAACACGGCCTTTGCCAAGTACGCTGACTTCTCTATCTCACCCAATGCTGTCAGCGCAGAGGAGGATGGCTACACCCTCTATGTGTCGGGCTTTGAGGATGGCGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006187-6-5,7-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(14.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development