DreINT0010751 @ danRer10
Intron Retention
Gene
ENSDARG00000098278 | FCGBP (2 of 2)
Description
Fc fragment of IgG binding protein [Source:HGNC Symbol;Acc:HGNC:13572]
Coordinates
chr15:36522773-36524853:-
Coord C1 exon
chr15:36524258-36524853
Coord A exon
chr15:36523332-36524257
Coord C2 exon
chr15:36522773-36523331
Length
926 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TTCTTTGTCCTCTTTGACAGGTA
3' ss Score
11.36
Exon sequences
Seq C1 exon
CTCTGTCCTGCCCACCAAACAGCCACTACAACTCCTGTTCCCCAGGCTGCACAGAGACCTGCGCCTATCTATCTGAACACAACTGTACCAGACCCTGTGCTGAGGCCTGCCAGTGTGACCGCGGCTTCATCTGGAGCGGTCTGACCTGTGTGCCACAAACTGAATGTGGCTGCTTCTATCAAGGACGCTATTACAAGAAATACCAGACATTTTACAACCATCCCCAGTGCATGCAGCTTTGCATGTGTGGGGAAAATGGAAACGTGTCCTGCCAGACATCAAGCTGCGGTCCAGGAGAAGCCTGCAGGATTGCGGATGGACTGTTTGGATGCCATCCTGTCAGTTTTGGACAGTGTGTGGCCACTGGTGACCCGCACTATATTTCTTTTGATGGAAGGAGATTTGACTTCCAAGGAACATGTGTGTATACGCTAGCTAAAGTGTGTGAGTGGAGTGTAGGACAGCTGAGGAATTTTTCAGTGGATACGCAGAACGAGCAGTTTGGAAACAGAGGCGTTTCTGTCATCAGGAGTTTGACTGTTAATGTCTACAATTTCACAATCACCATCAGACGAGGAGAACGCTGGAGAGTCATT
Seq A exon
GTAAGTGTTTACAGTCAGAGTTTGGCCTTTTTGTTAATGATAATAATACTTTGTTTTCTGCAAGGATGCATCAAACTGATTCAAAAAGTCAAGATTGTTGATTGATGTTATGAAATGTTTCCAATTAAAATATCTTTTTAGGTAACACTTTACAATAAGGTTGTATTAGCTAATGTTAGTTAATGTATTTACTATCATAAACAAACAATGAACAATATGTTAATTGCAGTATTTATTCATGTTTGTTAATGTTAGTTAATGGAATTAAAGCTGTTCATTGTTAGGGCATTACCTAATGCTAATAAGCATGAAGTTGGATGTTGCATTAGTAAATGTTGAGATACAATTAATAAATGCTTTACAGGTATTGTTCATTCTTAGTTCATAATAGTAAATACATTAACTAATGAAGCCTAATTGTAAAGTGTAACCATTTTTTATTTACTTACTATTCATCATGGAGTCTTTAAAATTTTTACTCTACTTTTCCAAGTTGCAAATTCAGTTTTTAATAAAAATTATAAGGCTTTTTAATACCTGTGCAAATCACAGAAATAAATACAAATTAGGCAAATAATATACTGAACGAACAGTGTTCTATAGCCCAGTGTCTATAATAGTATACTACTAAGCCATGAAGTTAATGTAATAACCATTAATTGAATACAAAATAAAATGTTGTACATGTAATAATTTTAAATCGTGTAATTACATAAATGGATATTAAAAAGTGGGTTTTGAAAAAAAAAAAAAATAGCAATGCAGTTGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAGGGATGGATAGTTTTGTTGTTAAAATATATAACTAAAAATAATATTTCTTTGTCCTCTTTGACAG
Seq C2 exon
GTAAACAATGAGAGTGTCAACCTCCCTTCATCTCTTGACCATATCACCATTAGCCAAGTTGGATTCAACATCATAATCCAAACTGATTTTGGCCTGAGAGTTCAATATGACACCGGTTACCATGCAGAAGTCCATATTCCATCAAGCTATCAAAACAGCACTTGTGGCCTGTGCGGCAACTACAATGGCAACCCGTCAGATGACTTCATGTTGCCTAATGGGACCCAAAGCTCCAGCGCAGAGACATTCGGACAGGCGTGGGCATTGAAAACAACTAGTGTTCAATGCGTAGGTGGAAGTTCCCCGAAACAGTGCATTCAGTCTGAAAACGACAGATACCGCAGAGATGATGCCTGTGGCCTGATGGCATCTGCCACCGGTCCCTTCAGTGCCTGTCATGACTTGGTGAATCCTGAGCCCCATGTGATTAACTGTGTGTTTGACATGTGCATTATGGATGGAGACAGAGCAACACTGTGTCAGAATCTTCAGGGTTATGCCATTATCTGCCAACAAGCTGGGATACAAATCATGCCATGGAGAAATAGTTCATTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098278:ENSDART00000164162:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=26.6),PF127142=TILa=WD(100=28.1),PF0009420=VWD=PU(51.3=40.2)
A:
NA
C2:
PF0009420=VWD=PD(47.4=39.6),PF087426=C8=WD(100=40.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGTAGGACAGCTGAGG
R:
GTCATCTGACGGGTTGCCATT
Band lengths:
351-1277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]