DreINT0054255 @ danRer10
Intron Retention
Gene
ENSDARG00000042953 | cyp2n13
Description
cytochrome P450, family 2, subfamily N, polypeptide 13 [Source:ZFIN;Acc:ZDB-GENE-041001-158]
Coordinates
chr20:25619237-25620540:-
Coord C1 exon
chr20:25620388-25620540
Coord A exon
chr20:25619398-25620387
Coord C2 exon
chr20:25619237-25619397
Length
990 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
GTTGTTTTTGCCCTTTTTAGGAG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CTGGACTCTTCTTCAGTAATGGTGAGATGTGGAAGAAGCAACGACGCTTCGCTCTGTCAACACTGAGGAACTTTGGATTGGGAAAGAAAACAATGGAGCTGGCCATCTGTGAGGAGAGCCGCTTTCTTCTGGAAGAGATAGACGAACAGAAAG
Seq A exon
GTATGCAACATGCTACGGTATATACTGTATGAACTTACCAGCTTCTTGGTAACTGAAAAGATTACAGATTTGGCATTAAGCTGGCACAGCAGGGCAGGCATTCATCTGGCACTGGCATATAGCATGTGGGCCAAACATGGCCCGAGTTTGGCAGAGGTGGCGTCGTCTTAAAGGCAGCACACAAGATTTGGGCCAAATGTAAAATATAGTATTTTACCCAGATGTTAAAAATTTACAAGTGGGCCATGTAAGTTTGGCCTGTCTTGACCCACATTTAAAATACATTAGAATTATTTTTGAGTTAAGAAATAAAATTCTACCAATCAAGTCTCTTTGAGAAAAAGCACGCCCATAGAGTGCTCAAAGTGCAAAATGTCATGGGTTTATCAATTTCTTTGCAATTGTGACACACCAACCAATCTGGCCCAGTTCAGGCCCAGTTATGAGTTATTAACTTGACTTAGACTTGGCCCAGGTATGGTCCATGTTTGGCCCTTGTCTGGAAGCCAAACTTGGTCCAGTCATGTACTGTAATTCACTGCGGCATGTGGGCCAAGCAAAACCTGATTGTGTGGGCCAGAGCTGGGCCAGAGAAATTTTGCTGTGTGGGCTGTGACCCCCCACCCCCACCACCACCACCACTAGCAATGCTTCTGTTTGTCTCATCACCACATGCTTTCAGTTGTGTTTTCGTCTGTGTAGTCAAGGTACGCTGATGTTAGTACTTCAAAATTTGAGTATAACACTGGAGTAATGAAATACAGTAGATTACCAGAGATTTCAATTTTCTTTTACAGTTTAAACTGTATTTTATCTGTAAAATTCTGGCCACCCCAGTTGCTTTTACTCTATTTTACAGATGTTTTTTTGCAGTGTACCTTACAAACTGGCCCTTGGCTGTACATATTCCGAAGTAAATGATTTTTGCATGCACCAGCTAGTTAAAATACATGTAACTAACACGACACATGTTGTTTTTGCCCTTTTTAG
Seq C2 exon
GAGCTGCTTTTGACCCAACAATCCTATTATACAATGCTGTTTCCAATATAATCTGTCAAATGGTGTTTGGCCAGAGATTTGACTATGCTGACCACCAGTTCAAAACAATGTTAAAATATATTTCTAAAAGCATTCAACTAGAAGGATCCGTTTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042953:ENSDART00000063058:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTCTTCTTCAGTAATGGTGA
R:
TGTCCCCAAACGGATCCTTCT
Band lengths:
312-1302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]