DreINT0099875 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24969174-24969502:-
Coord C1 exon
chr11:24969364-24969502
Coord A exon
chr11:24969293-24969363
Coord C2 exon
chr11:24969174-24969292
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTAAAACGTATCTTTTCAGGTG
3' ss Score
8.12
Exon sequences
Seq C1 exon
CATGCCATGGACATCCTGGGCTTCACTCCAGAAGAAAAGTACGGCTGCTATAAAATAGTAGGGGCCATCATGCACTTCGGGAACATGAAATTCAAACAGAAGCAGAGGGAGGAGCAGGCAGAGGCTGATGGCACTGAAA
Seq A exon
GTGAGTATAAACCTTGCATCTGACGTATTTCGATAGATGTTTTAAATATGGTCTAAAACGTATCTTTTCAG
Seq C2 exon
GTGCTGATAAGGCTTCCTACCTGATGGGCGTTAGCTCAGCAGACCTTATAAAAGGTCTTCTGCACCCTAGAGTGAAGGTGGGCAATGAGTATGTGGTTAAAGGACAGAATGTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACATCCTGGGCTTCAC
R:
TGAGCTAACGCCCATCAGGTA
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]