DreINT0099895 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24952598-24953364:-
Coord C1 exon
chr11:24953015-24953364
Coord A exon
chr11:24952723-24953014
Coord C2 exon
chr11:24952598-24952722
Length
292 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGT
5' ss Score
8.34
3' ss Seq
CTTTTTTTCGGTTCTAACAGAGG
3' ss Score
8.26
Exon sequences
Seq C1 exon
GAAGAAGTTGGCCACACGCCTCCAAGAGTCTGAGGAACAAGTTGAAGCCTCAAACGCCAAGTGTTCCTCATTAGAAAAGACCAAACATCGGCTGCAGTCTGAGATTGAGGATCTGGTATTAGATCTGGAGCGCTCGAACGCTGCCGCCACTGCACTGGACAAGAAGCAGAGGCAATTTGACAAGATTCTGGCTGAATGGAGGCATAAGTACGAGGAGTGCCAGTCTGAGCTGGAATCATCTCAGAAAGAGTCTCGTAATCTGAGCACGGAGCTGTTCAAACTCAAGAACTCATACGAGGAGGCTCTCGACCATCTGGAAAGCATCAAACGGGAGAGTAAAAATCTACAGG
Seq A exon
GTATGTCGTTTAATGGATTATGAATAGATGAAAAAAATCACTATCATCTAACATTCCTGAAGGACCACCAGCTCAGCACATATTCCATGTCTCCTTAACCAAACACACCTGCTTCAGTTTATCAGCTCATTAGCAGAGAGTAAAAGACCTGTAATGGGTGTAGCAAACAAAGGGGTCATCCAAAACATGCAATGATGGTGGTCCTCCAGGAACGTGGTTGAGAAACACTGATCTAACATATATTGTCAGTAACAAAATGTGATTTATGAATACTTTTTTTCGGTTCTAACAG
Seq C2 exon
AGGAGATTTCCGACCTCAATGACCAGATTAGCCAGGGCGGCAAGACCATTCATGAGCTGGAGAAGATCAAGAAGGGCTTGGACTTGGAGAAGACGGAAATTCAAGCAGCTCTTGAGGAAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.6=100),PF045827=Reo_sigmaC=PU(71.7=83.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(27.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCACTGGACAAGAAGCA
R:
CGTCTTCTCCAAGTCCAAGCC
Band lengths:
298-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]