DreINT0101095 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22263839-22267106:+
Coord C1 exon
chr21:22263839-22263944
Coord A exon
chr21:22263945-22266992
Coord C2 exon
chr21:22266993-22267106
Length
3048 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TATTCCTTTTTTGTTTGCAGGCT
3' ss Score
9.81
Exon sequences
Seq C1 exon
TAATGGGTCCAGAAAGTATCCTCCTCACCTTGTAGAAGTGGAGGCCATTCAGCACAAAACCACCCAGATCTTTCACAAAGTGTACTTTCCTGATGACACTGATGAG
Seq A exon
GTGAGAGTTTAACTACATTTTGAAGGTGTTATTGTCTTCTCTCTATCTTTTTTTTGTTTTTGCTCTCTGTGTGTATTTCTGCTTGAGGATGCGAAGCAAATGTCCTATTGTGTTTTGACCTCATTTGAATCTGCAATTACAGGGATAGTTCACCTAAAAATTACAATGAAATGTTATCATTTACTCACTATTCAATTGTCACACTCAAAATAAGGTATTTTGAAAAATGTTATAAAATGTAATATATAATAATTGACTTCCGTTGAATTTGTTTTTTTTCTTTTCTCTGGATGTCAATGGTTACTCCGTTTCCAACAATCATTAAAATATCTTATAAAAAGAAACTATGAAGAAACTCATAATGAAATAAAGGTTTGGAACCACATAAGGGTGTGTAAATAATAAGTACAGTTTTACTTTTGGGTCAGCTGTCCCTTTAAGGCAAGATACTGCAGATAAATAGGGTAAAAATACTAGTTATCAGCATTTTTCCAGTTAATTTTCTAAAATTGCAGTAAGTCAGGTCGAATTTATTTATTACATATTAGAATCAAATGACTTACATTTTATGTTTGTGGCTCTGTACACAATATATATCATATGGGCAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATGAGGCGACGCAGTGGCGCAGTGGGTAGTGCTGTCGCCTCACAGCAAGAAGGTAGCTGGTTCAAGCCTTGGCTGGGTCAGTTGGCGCTTCTGTGTGGAGTTTGCATGTTCTCCCTGCGTTCGCGTGGGTTTCCTCCGGTTGCTCCGGTTTCCCCCACAGTCCAAAGACATGTGGTACAGGTGAATTGGATAGGCCAAATTTTCCGTAGTGTATGAGTGTGAATGAGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCAGCTGGAAGGGCATCCGCTGAGTTAAATGTGCTGAATAAGTTGGCGGTTCATTTCCCTGTGGCGAACCCGGATTAATAAAGGGACTAAGCCGAAAAGAAAATAAATGAATGAATGAATGAATGAATGAATGAACAATATAATGATTTTACAGGTGGGATCTATTTTTATCACTCCATAATTAATAACCTCAATAACCCAGAAATAAAATAATTTAAAAAAATTTTGTAGACTAAAATGATGTACATAATCTGGCAAATGATGTAAAAACATATATCTCTTTAAAAACTTTTAGAATACAGATATGAGTAAAGTGTGATGTTTGGTGTAAGTACTGCTGAGGTGGAGATTTATAAAATTCCTTTATAAATGTGTTATAATGGAAATATACAGATGCTAATTCATGAAGCGAAACAAAAGCAGCACTTAAAGGGGTATTTCAGATGGTTACTTTCCATTAAACTGAACAAACATTATAAAAATCGGAGGAGCACAAAATCTCAAAACTGACTTGTATGTAAAAATAGTACAGCGTCTCGCACAGAAAACGGCAGAGGGATGAAGTGTGAACAGATGCACGAGTCTAAAAATTCATTTTGTGTTGGGTCTAATTCATACCTTTCAACATTTAGATGTAAAAATACAGGATACCTCAGTCTCGCTTAAATACTGTACAGATCTATTATAAAAACAGTTGATGGTCATGTTTGCTTTTTATTTTGTGTATTTGTCTGTTTAAAAACTGTAATGATCCAGATGCTGAGAGCAGACTTGCGGATCCACATGCAGTTTATGAATTGAGGTCGTACAGGCCAGAGTCATAAACAGAAGCAAAAAAGTACCATAACAGAATAATTGTGGTCAATATACAGGCAAGACGTCAGACTGGGCAGCAATGGGTCAGGACAAGAAACAAGGATCAAAACACAGGAAAACAAACCAGGAGAACCGCTTTGTAAAGTTTGTGATAGAAACAAGACTCTGCAATGTGTGAATGAAAGTGAGGTGAATTTATAGTCTTTGTAATCAGTGTAGATGTGCAGCAGCTGTGTCTATGTGTAAGTGTCCGCATTATTGTCAGCGGTTGCAGGAGTTGATGAGCGCAGGGAGTTCTGGGAGTTGAAGTTTGGTCAGCAGTAATCTCTCATAAAGAAAACCCTGCTGGGAATTGCAACAAACTACAGGAAGTAGATCACCAGCGGGGCTACACCATTGGCAGTCATAACAAAAACACACCCAAATCCCAAAGTTTCCACTTTTGCGCCTCTTCAAATTGCATCTGCAGAAGTGCATTCAAGCCAAAATAAAGCAAAAGCATAATTCTCTTGAACAGCTCATGCAATTATATCACATTTGAGATCAGCTCATGTTGATGTTTCTTCCACTTTTCATAGAAGAATTTAAAATTTGGGAGAAATTCTGGAAAATATTTAAACAGGATGATATCTGGATCGAATGGTAAAGTACAGGAGAATCATGGCAAAAAAGGCAGTGTTGACACATATGATTTAATTATAACTAATACATGATTTGGACTGTATTCTTACTTTTTTATTGTTCTCATGCCATGGCTTGTTTTCACTGAGCAGTAATGTTTCGGTCCACTACAGTACAGTATAATACACATTTATTTCCATTTCCACTGTCCAAAGTACCAAAAAAGCAAACAGTACCCCTTTTTTGGCAGCTATTCAATTTTTGGTACCTAGCACAACAGTACTGTACCAAAAAGGTGGAACTAGACTCACTGCTGAATGCTATTGGTTTACAGAGAATCATCACTTGCATGACAAAAAGCCAGGAGAACGACAACAGGACTCACTATTTTTACATAGCTAAAAGACAACACCATAATAATACAATAACAAACCAAACAAAGCTTGTCGTCTTCTTTTGACAAACAGCCACATGCCAAAAGCAAGAACAGGGCCTGCTGTATGTCCTCCTTTGTTGTTTATGAGGTCATTTACATGTAGAAAGCACGAAGCACACCGCTTTCTGACATTCGGACACCAATCCAACCAAGTAAAGGATGCTGTCAGCAGTGGAAACAAAAACCTGTTTAAATAATCAGGTGAAATAATGACGTCTGAAATGTCTGTTTTTTAAATATTCCTTTTTTGTTTGCAG
Seq C2 exon
GCTTTTGAGGTTGAATCCAGTACAAAAGCCAAAGATTTCTGCCGAAACATCGCCGGCAGGATGATGCTTCATTCCTCTGAAGGTTTCAGCTTGTTTGTCAAAATTTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PD(15.9=47.2),PF093795=FERM_N=PU(8.5=22.2)
A:
NA
C2:
PF093795=FERM_N=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]