GgaINT0010703 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2958667-2959508:-
Coord C1 exon
chr20:2959370-2959508
Coord A exon
chr20:2958786-2959369
Coord C2 exon
chr20:2958667-2958785
Length
584 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GTCTTGCTGTGGTTTTACAGGTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
CATGCCATGGACATCCTGGGCTTCAGCAATGATGAGAAATACGGCTCCTATAAAATAGTGGGCGCTATCATGCACTTTGGCAACATGAAGTTCAAGCAAAAGCAGCGGGAAGAGCAGGCAGAGGCTGACGGCACTGAAA
Seq A exon
GTGAGTTTTAATCTGGGCTGCCAGATTCACCCAACCTCAGCTGGGCATCCAAACCCCTCTGAGGGCAGGCTGTGAAAGCAGGCCTGGTCTGTGAACGGCAGTGACTGTGATCCTAAGCAGCTGCAGTGTTAGGACCTGCTCTGGGTGCACAGAGGAATGTTCACCTGGAGGCAGGCCTTGTTGTGGTAACGCTCATGGTGGGAGAGTTCCTCTTCATGAGGAATGTCAATACAGGGTTCAGCTGCTACATGGTAATTAAAAAAGACTGTCATCTAGTAGAAATGATTTCTTACAGAGGTGGTTTTCTTGCTACAATCTACTGTAAAGAGACAAAGAAAAATCACCTCATCAGTCCAGATTTACTGCATGAGAATTTAAGATCCCAGCTCTCCAAACTGTAACTTCTGAGGCAGGAGGTCCAGCCTGTAAGAACAGCATAAAATATCCAAAGTTAGAAATCACAGTGCAGCCACTGGAGCAGACTCTTAAGCAGCATAGTTAGCACTGATCAGCAGAATAGCTGGTGATTTTTCTTTCCCGTGGCTTACTTTCTAGTTTCCTGATGTCTTGCTGTGGTTTTACAG
Seq C2 exon
GTGCTGACAAAGCTGCCTACCTCATGGGGATCAGCTCAGCTGACCTCATCAAGGGCTTGCTCCATCCTCGTGTGAAAGTGGGCAATGAGTACGTGACCAAAGGTCAGAACGTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCATGGACATCCTGGG
R:
TGCTCCACGTTCTGACCTTTG
Band lengths:
257-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]