HsaINT0028652 @ hg19
Intron Retention
Gene
ENSG00000183287 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:29426]
Coordinates
chr18:57098171-57105378:-
Coord C1 exon
chr18:57105343-57105378
Coord A exon
chr18:57103374-57105342
Coord C2 exon
chr18:57098171-57103373
Length
1969 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GATTCCTCCCATGTACACAGGGA
3' ss Score
6.51
Exon sequences
Seq C1 exon
GGGGAGAGAGGAGCGCCTGGGCCCAGAGGGTCTCCA
Seq A exon
GTAAGTAGCACTCTGTGTCCTGCTTCCCCAGGGGAACGTTCTCAGGGATGCAGCTCTGATGAGCCTATAGGTTGGTCTAGTAGCAAAAGCCCGCCCCTTCCTGATGCCACTCAGCCCACCTGAACAGAACTCTGTGGTTAGGAAGAGAGTCATAGAAGCCCTTAGCTGCTAGTTTGGATTTATTTTTCAAATTTGTTTTCTGTTGCTGTTTTCTCTTTTATCATGGCTAATCTTTATTTGAAATGTCTTTCCTAAAGCTCAAAACCCTGCTATGCCATGAGTCTGTTTCCAAGTATTATCATAAAACATTTGAAAGGTCTAGGAAGGAAATCTATGGGTTTAAATCATAACTCTGCGTACTTGAGAATTTAGCCACTGCTGCAACCCTAGCAGGCCAGATGGCCATCTCCTCTTAAAAAGTGCAAAACCACGCAGGGCTGTTTAGGACCTGAGAAGAAATTAGCTGCATATAAGCATAGTATCTGGGAGATTAAAAATGAGAAATAGTAGTATTCAAAAGCATAGAAAATTCAAACCACGTCACTGCTTCTGAAGAAGTATCATTTCTGAAATCCAGCGGCTGTGGCCACAGAGGTAGGAGTCGTGGGTTCCCATCTCAACTCTTCTACCTGCTGGCTTTCTGACCACGGGCACTTCACTGAGGGTCTCTGGGCATTCTTGCCCCCCACTGTGCAGTGGCGATAGTGGAATCTGACCTGCCATCCCTGAAGTGGCTACTGTGAGGGTCAAATGATATGAAAATACTGTGCCTCTCTTAGTGCTTTACGGTGTAAGCTCTGCTTCCACGGTGCCCGCTGCTGTAGCAGCAGTTGCGGGAGATGATAACGATTTTACTACAAGCTTCTGACAAGCCCAGAACATGCGTGTTTGTGCATTTCTTTTTTACCATGCCCCACACAGCGCTATATGAAATTAAGGCTTAGTAAATACTATATGATGATAAAGGATACTCAATACATAGAAAAATTAGGAAGATTTTGTTTGGACCTTTCCTAGTCAACGAGGAGTTGACGTCTTTACAACATCCTCTCAACTTCATTTAGTTTGTGCTTATAGTCAGCCATCTTATAAACATTTTAATAATTTTGCTTTTAAAAAATAACAGCATTGTTTTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAGCCTCGACCTCTTGGGCTCAAGTGATCCTCCCACCTTAGCCTCCCAAGTAGCTGGGTCCACAGGTGCCCACCACCACACCTGGCTAAATTTTTGTTAAATTTTTGTAGAGACAGGGTTTCACCATGTTTTCCAGGTTGGTCTTGAACTCCTGGGCTCAAGCTATCCATCCACCTCGGCCTCCCAAAGTGCTAGGATTATAGGCGTGAGCCACCACACCTGGCCCAGATAACATTTTTGAATACGTATTATGCTCAAAGCCCTTTACACGTATTTACTTGCTTAAATCCTCACTTATGAATCCTACAAAACCCTATGAAGTTGGGACTATTATTATCCCCGTTTTACAGATGGGGAAACTGAACCACAAGAAATTAAGATGACACAGCTAGTAAGCGGCAGAGATGAGATTCAAATCCAACAGAACCCCAGTCTCTTAACCACTGCTCTGCTGCCTTCATAAGCATCTTCCAGACTGCTTTGGAAAGTAACCTAGGAGAGTTATTCTTATATCCTTTCCTCTACTGGATTTGATAAAGCGTTAGGAGGGAGGAAAGGTGAATACATCACCAAAGCTCAGCTGAGAAGTGACAGAATTAGAAAACAATATGGAGGACCCCCAGGCTCCTGTAGCAGTCCTCACATTGGCTCCATTTGGGGCACAGAGTTATTGAGAAAGTAGTTGCCAGCAAGCAGCAGGTCAAGTCATGGAGCCCCGGAGGCCATTGCTGTCTGTCGTATTCTAGCTTTGATTCCTCCCATGTACACAG
Seq C2 exon
GGACCCCCTGGTTCTTTCGACTTCCTGCTACTTATGCTGGCTGACATCCGCAATGACATCACTGAGCTGCAGGAAAAGGTGTTCGGGCACCGGACTCACTCTTCAGCAGAGGAGTTCCCTTTACCTCAGGAATTTCCCAGCTACCCAGAAGCCATGGACCTGGGCTCTGGAGATGACCATCCAAGAAGAACTGAGACAAGAGACTTGAGAGCCCCCAGAGACTTCTACCCATAGCACATCCCAACACCGTCACGCCAAAGGAAGAGAAAGATCAACTCACCTGCAGTTAAACCATCTAAAGAGAAGAAAGACCACTGGAGACCTAGAAAACATACATTTTTCTCTTCTCTTCTCCTGACGTCTCTCCACTCCTCTTCTTCCAAATACGATGCTATTTTCAGAGTCCCCTCCTAGGCCTGCAGACATGAGGGAGTGAATGATTGATTTACCTGCTTCTCACTAAGAGTCCATTGGGGTGGTTTGCATTGTAACTTTTCTTTTACATCCTATTTTTCCAGGAACTTTGGATTTAAGTACTCTCACAGTGTCTTAAATCATAAATTCTTGAAGTTAAATTTGGCAGAGTATCAAAAGGGGGAAAATGACAAAGTGAGCTCTAAGAAAATGTGAGGCTACTTCTAAGATGTGTGTTCACAATAGACCATAACTCCTCTAGTATCAAAATTGGGGCTCTTCAGTTAAAAAGGGGTGGGGAGGACAAACGTGTCGATGTGCTTTGGTGGAGAATTTTTTCCTTGTGCTTCTAGTAGACTTTAAATATTGTATCCCTTTGTCAAACCTTGTTTCCCAAATTCAATTAAAGAGAGGAGAGAATTGAATGGCGTTTAGAGAAGATAGAAAAGAATCACAGTCATATATTTACTGTTATATAGATTGCCACATTCTAAAATTCAAATACGGTGCTTAAGGTTTCATGCCATGCTTATCTGTAAGTATCCTATTTAGGGAAGAAGATTAAACTCTCTTTTCAAAAAAACAAAGTGAAATGCCTGGATTCACATTAAAACAATGGGCTCTCGTTTGCTATAATATTTTAAAGCTGTTTAATCAACAGTGGAGTCTGCTCTATAAATATAGATTATTTGTTCAATAAACTGGCTGAGCTTAGAGAGAGGTGCAGAATTCCTGGTTCTGAGCAGGTGCCCAGAAGGTACCATTAGGTGCCATGATCCAGGCTGAACCAATATACAGTGGGGCTGAAGTCTGCAAGGAGGTTGCTGGCTTGGGCTGACCTCACTAATGCCATCAGCAGCGGTAGGTAAATTTTTTCTCCTTGGGTATTACAAGTTTTTGTCTGGAGCCAACCAAGCTTGCCACCAACATATTGAGAGTAATACACTATTGAAAGTTATCTTGGATGGGGAGAAAAAAAAATAGTGGTTTTCCTTGTTTGCAAAAACTTCCTTCCTATTCTCATTTTTTCTTAATTTTCTTTAATTTAGTCCAAGTTCCAGTTCTTTTAGGCCTTCTCTTTGATTTATTTTCCCCTGCATGTGAGAAGCAGTTCAGAAAAAGGTCTATATCTCCACCTCCTAGTGAGTTAGAGTGTTTTCTCAGAGCACCTCTGGGTGGCAAAGGGAAGCATGTTCCTGCCAAGGTTTGCTGTGGATTCAGAAGCACCAGGAGCAAGAGACCAGAAGGATGATCTGCTCCTTTGTAACGTTGTTGAGGGCCCTCTTGTTTCCAATGAGCAGCTTATAGGTTACTCACAGTCCACTTTCTCACTGGACACACAAAGTGGCTCTTTATCTACCTTTGCGGGAGATTTTCACTCTCCTGCAAATGATCGTTCTCACACTCATATTAGCTCATGTTGGAATTTCCCATCCTGCCATGTCCTTTCCCATTTCTTTTTGGCTTTTTTGCCTCCACCTTTTAGCCCACATCATTTAACTCCACTACTGTGAAAGCTTGCTTAAAGAAAATCCCTCTTGGCCGGGTGTGGTAGCCCACGCCTCTAATCCCAGCACTTTGGGAGGCTGAGGCGGGGAGATCACAAGGTCAGGAGATCGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGTTGGCACACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTACTTTAACCTGCGGGGGGAGCCTAGATTGCGCTACTGCACTCCAGCCTAGGCAACAGAGGGAGACTCTGTCTCATTAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGGGCTTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACAGTGAAACCCTGTCTCTACTAAAAACACAAAAAATTAGTCGGGCGTGGTGGTGGGCGCCTGTGGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCGCTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAATATCCCTTTTGTTGTGTTTGAATGCCACCTTTCAGTCTTCTTCCTTAAGAATGTTAGGAAGGGGCTTTGCAAACCTCTAGTGGCAACAGTCTTCCTTCCCTTCTTCCTACCACGTTGGAAATGCAGGACTCATGTCAGTCAGCATGTGACCGAGTCTTTCATGAACACTTTGCTCCTCTATGTCTCATTTATGCAAAATTCCTGGTGACTCTCCACTAACATTTTTAAAGTGAAAGCAAACTTTCACTTTAAAAAAAGTGAGCGAGAGGATCCCTTGAGCCCAGGAGTTCAAGGCCAGTCTGGGCAACATAGCAAGACCCCATCCCTAAAAAAAAAAAAATAAGTTTTATTAAATGTGGCACTTTCCCCTAGAAGGGCAGTAACCCCAGGAACCAGTCTGCCTCTTTTCGAATAAAGGAGACTTTTTAAAAAGAAAAAATTTCTTTTTAGGGTGGGGTGCTCTTTATCTAGCATCTTTCCTTCCTCCTTCTCTCTGCAAAATTCAACATTCATGACAGAGGGCCACACCAACCACGGGTTTATAGAGAGAGGAACTGAACAGCTGTTGATTCCCATCTGGAATATATTTAATGTTTGCCTGCTTGTGGAGCATGGTATTTAAAGGGTGTGGATGGATGAATGTTTAAAAAAAAACACACAAAACTATGCACAAGCTGTATGAGAGATGGCTAGGTCCATCTATGATTTTTTTTAAAAGAAGAATTTTAATACCTTTTCTTTGACAGTGAACTGTATTTAGAAATATGATCTTTATTGTGAAATGCTCATAAAATGCAACCAAACTGCATGTTTGGCCATAGGCTAGAATAATATATTAAAAGAATTAATGGAAAGTAGTATTGTCTGGGTTTCATGAAACTATTCCAGATAATATTCTCCAGCAAAACTTATGGTAACCTGTATTTTATAATGTCAATCTGCTGGACCAAGTTAATTTAGAAAATAATTTTTAATCCTCAGATTTTCAAAACTTGGACTACTGCAAGACTGATATGTACTTTTTATGCCCAAATCATATTTTTCAAAGATAGGACATCATAAGGCATCATTATTTCTAATGTATCTTTTAACTAGATAGAAAAAGCTTTACTGTCTAAACAGGACTTCTGCTCAAAACCTAATGGGAAAGCTATTTCTGGGGTAAGATTTGTAACAGTGCTTCTAGGTCATTTCATGTTTTATAGGGAAAAAGATCTTTGTACACCTCCTCAACCTGTTAGTAGAAATGTTGACTTCGATTTTTTGCACCCTCTTCACAGGACCTCATAAGTTGCCTCTGTTCTTGGAAAGCAATGGGAATAAAAATATGCTGTTGAAAATAGTGCATGGGGCCAGGCACAGTGGTTATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCGGGCGCATCATGAGGTCAGGAGATCAAGACCATCCTGACCAACACGTGGTGAAACCCCATCTCTACTAAAATAAATAAAAAAAAAAATTAGCCAGGCGTGGTGGTGCACGCCTGTAGTCTCAGCTACTCGGGAAGCTGAGACACAAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGCTACAGAGTGAGACTCCGTCTCGAAAAAAGAAAATAGTACATGGAGGGCATGCATTTTAGTTTAGGAAACCCCCCTCCCTTCCCAGTTCCAGAGGGAGAAATTATAAGCTATACTGTGCCAAAAGTGAGTGGGGCTGCAGAGAGAATGGTGCCTTTTCTCACCTTCTGAGTTAATGCCCGACATCTGCCATTGGATTCATTGACCAAAGGAAGTCATTTCTACTGTATAAACTCAGGAGTATCATAGCCCAACAAGTAAATAATAAATGTTCATTGGTTTTGGAAGGAAGGAAAGGTGAGTATTACCCCACCAAATACCAGCGAAGAGCACCCTGGCTTTGGCCATCTTTCCAAGGTTCATAATTGCTGTGGGCCTGGTGAGCCCTGTTCCCAGGTATGCAAGGGAGGGCTTCTCCAGGCCAGACATTTCTGTAGGTTTTCAGGTAGCAACTCCCCCATCATATTTTGGGTGTCATTCCCCACTCTCTCTCCCCACTTCTCAGCCTGTGCCCCAGAAACAACCACAGCAGCCTCATTCTGCAGACTTAACATCTGTCAAATAACCTTCCTGAAAAGGAAAGTTATTGGAGGAATCCAGGCCAAACAACAAGTAGAATAGAGCCATCTAAAGTTATTAATAATGAGTTCAGGGAAATAGATGAATTTTTTCCTGGCATAGTCAATATTTATATCTCACAACAAGTCAAAAATAATTTTCCATTTGGAAAACAAAACACACCATGACTGTAATTGTTAAGGCATATAATCATGAACTTCACATGCTCCCTCAACAAACGTTACTGCTCTAGGGAAATCATAGAAAAGGACCCTCTTACTCCCCAGGGGATCAAAGCAAGTCCCCTTAGGAATTTCATGTGTGCCGTGGGTCTGTTTTTATTTCACAGTGACTAGTCATATACTGGAGTAGCTCTGTTGTTCATTATTTGTAACAGGTCCATGTAACAGTCAAGTTAGCATTCAAGCAATTATGGATGTGATACTATGATGTACTTTTGTTATGATTGTATATGCTTAATAACAAAGTTATTTTTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183287-CCBE1:NM_133459:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.9=100)
A:
NA
C2:
PF0139113=Collagen=PD(13.2=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)