HsaINT0028652 @ hg38
Intron Retention
Gene
ENSG00000183287 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chr18:59430940-59438146:-
Coord C1 exon
chr18:59438111-59438146
Coord A exon
chr18:59436142-59438110
Coord C2 exon
chr18:59430940-59436141
Length
1969 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GATTCCTCCCATGTACACAGGGA
3' ss Score
6.51
Exon sequences
Seq C1 exon
GGGGAGAGAGGAGCGCCTGGGCCCAGAGGGTCTCCA
Seq A exon
GTAAGTAGCACTCTGTGTCCTGCTTCCCCAGGGGAACGTTCTCAGGGATGCAGCTCTGATGAGCCTATAGGTTGGTCTAGTAGCAAAAGCCCGCCCCTTCCTGATGCCACTCAGCCCACCTGAACAGAACTCTGTGGTTAGGAAGAGAGTCATAGAAGCCCTTAGCTGCTAGTTTGGATTTATTTTTCAAATTTGTTTTCTGTTGCTGTTTTCTCTTTTATCATGGCTAATCTTTATTTGAAATGTCTTTCCTAAAGCTCAAAACCCTGCTATGCCATGAGTCTGTTTCCAAGTATTATCATAAAACATTTGAAAGGTCTAGGAAGGAAATCTATGGGTTTAAATCATAACTCTGCGTACTTGAGAATTTAGCCACTGCTGCAACCCTAGCAGGCCAGATGGCCATCTCCTCTTAAAAAGTGCAAAACCACGCAGGGCTGTTTAGGACCTGAGAAGAAATTAGCTGCATATAAGCATAGTATCTGGGAGATTAAAAATGAGAAATAGTAGTATTCAAAAGCATAGAAAATTCAAACCACGTCACTGCTTCTGAAGAAGTATCATTTCTGAAATCCAGCGGCTGTGGCCACAGAGGTAGGAGTCGTGGGTTCCCATCTCAACTCTTCTACCTGCTGGCTTTCTGACCACGGGCACTTCACTGAGGGTCTCTGGGCATTCTTGCCCCCCACTGTGCAGTGGCGATAGTGGAATCTGACCTGCCATCCCTGAAGTGGCTACTGTGAGGGTCAAATGATATGAAAATACTGTGCCTCTCTTAGTGCTTTACGGTGTAAGCTCTGCTTCCACGGTGCCCGCTGCTGTAGCAGCAGTTGCGGGAGATGATAACGATTTTACTACAAGCTTCTGACAAGCCCAGAACATGCGTGTTTGTGCATTTCTTTTTTACCATGCCCCACACAGCGCTATATGAAATTAAGGCTTAGTAAATACTATATGATGATAAAGGATACTCAATACATAGAAAAATTAGGAAGATTTTGTTTGGACCTTTCCTAGTCAACGAGGAGTTGACGTCTTTACAACATCCTCTCAACTTCATTTAGTTTGTGCTTATAGTCAGCCATCTTATAAACATTTTAATAATTTTGCTTTTAAAAAATAACAGCATTGTTTTTTTTGAGACAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAGCCTCGACCTCTTGGGCTCAAGTGATCCTCCCACCTTAGCCTCCCAAGTAGCTGGGTCCACAGGTGCCCACCACCACACCTGGCTAAATTTTTGTTAAATTTTTGTAGAGACAGGGTTTCACCATGTTTTCCAGGTTGGTCTTGAACTCCTGGGCTCAAGCTATCCATCCACCTCGGCCTCCCAAAGTGCTAGGATTATAGGCGTGAGCCACCACACCTGGCCCAGATAACATTTTTGAATACGTATTATGCTCAAAGCCCTTTACACGTATTTACTTGCTTAAATCCTCACTTATGAATCCTACAAAACCCTATGAAGTTGGGACTATTATTATCCCCGTTTTACAGATGGGGAAACTGAACCACAAGAAATTAAGATGACACAGCTAGTAAGCGGCAGAGATGAGATTCAAATCCAACAGAACCCCAGTCTCTTAACCACTGCTCTGCTGCCTTCATAAGCATCTTCCAGACTGCTTTGGAAAGTAACCTAGGAGAGTTATTCTTATATCCTTTCCTCTACTGGATTTGATAAAGCGTTAGGAGGGAGGAAAGGTGAATACATCACCAAAGCTCAGCTGAGAAGTGACAGAATTAGAAAACAATATGGAGGACCCCCAGGCTCCTGTAGCAGTCCTCACATTGGCTCCATTTGGGGCACAGAGTTATTGAGAAAGTAGTTGCCAGCAAGCAGCAGGTCAAGTCATGGAGCCCCGGAGGCCATTGCTGTCTGTCGTATTCTAGCTTTGATTCCTCCCATGTACACAG
Seq C2 exon
GGACCCCCTGGTTCTTTCGACTTCCTGCTACTTATGCTGGCTGACATCCGCAATGACATCACTGAGCTGCAGGAAAAGGTGTTCGGGCACCGGACTCACTCTTCAGCAGAGGAGTTCCCTTTACCTCAGGAATTTCCCAGCTACCCAGAAGCCATGGACCTGGGCTCTGGAGATGACCATCCAAGAAGAACTGAGACAAGAGACTTGAGAGCCCCCAGAGACTTCTACCCATAGCACATCCCAACACCGTCACGCCAAAGGAAGAGAAAGATCAACTCACCTGCAGTTAAACCATCTAAAGAGAAGAAAGACCACTGGAGACCTAGAAAACATACATTTTTCTCTTCTCTTCTCCTGACGTCTCTCCACTCCTCTTCTTCCAAATACGATGCTATTTTCAGAGTCCCCTCCTAGGCCTGCAGACATGAGGGAGTGAATGATTGATTTACCTGCTTCTCACTAAGAGTCCATTGGGGTGGTTTGCATTGTAACTTTTCTTTTACATCCTATTTTTCCAGGAACTTTGGATTTAAGTACTCTCACAGTGTCTTAAATCATAAATTCTTGAAGTTAAATTTGGCAGAGTATCAAAAGGGGGAAAATGACAAAGTGAGCTCTAAGAAAATGTGAGGCTACTTCTAAGATGTGTGTTCACAATAGACCATAACTCCTCTAGTATCAAAATTGGGGCTCTTCAGTTAAAAAGGGGTGGGGAGGACAAACGTGTCGATGTGCTTTGGTGGAGAATTTTTTCCTTGTGCTTCTAGTAGACTTTAAATATTGTATCCCTTTGTCAAACCTTGTTTCCCAAATTCAATTAAAGAGAGGAGAGAATTGAATGGCGTTTAGAGAAGATAGAAAAGAATCACAGTCATATATTTACTGTTATATAGATTGCCACATTCTAAAATTCAAATACGGTGCTTAAGGTTTCATGCCATGCTTATCTGTAAGTATCCTATTTAGGGAAGAAGATTAAACTCTCTTTTCAAAAAAACAAAGTGAAATGCCTGGATTCACATTAAAACAATGGGCTCTCGTTTGCTATAATATTTTAAAGCTGTTTAATCAACAGTGGAGTCTGCTCTATAAATATAGATTATTTGTTCAATAAACTGGCTGAGCTTAGAGAGAGGTGCAGAATTCCTGGTTCTGAGCAGGTGCCCAGAAGGTACCATTAGGTGCCATGATCCAGGCTGAACCAATATACAGTGGGGCTGAAGTCTGCAAGGAGGTTGCTGGCTTGGGCTGACCTCACTAATGCCATCAGCAGCGGTAGGTAAATTTTTTCTCCTTGGGTATTACAAGTTTTTGTCTGGAGCCAACCAAGCTTGCCACCAACATATTGAGAGTAATACACTATTGAAAGTTATCTTGGATGGGGAGAAAAAAAAATAGTGGTTTTCCTTGTTTGCAAAAACTTCCTTCCTATTCTCATTTTTTCTTAATTTTCTTTAATTTAGTCCAAGTTCCAGTTCTTTTAGGCCTTCTCTTTGATTTATTTTCCCCTGCATGTGAGAAGCAGTTCAGAAAAAGGTCTATATCTCCACCTCCTAGTGAGTTAGAGTGTTTTCTCAGAGCACCTCTGGGTGGCAAAGGGAAGCATGTTCCTGCCAAGGTTTGCTGTGGATTCAGAAGCACCAGGAGCAAGAGACCAGAAGGATGATCTGCTCCTTTGTAACGTTGTTGAGGGCCCTCTTGTTTCCAATGAGCAGCTTATAGGTTACTCACAGTCCACTTTCTCACTGGACACACAAAGTGGCTCTTTATCTACCTTTGCGGGAGATTTTCACTCTCCTGCAAATGATCGTTCTCACACTCATATTAGCTCATGTTGGAATTTCCCATCCTGCCATGTCCTTTCCCATTTCTTTTTGGCTTTTTTGCCTCCACCTTTTAGCCCACATCATTTAACTCCACTACTGTGAAAGCTTGCTTAAAGAAAATCCCTCTTGGCCGGGTGTGGTAGCCCACGCCTCTAATCCCAGCACTTTGGGAGGCTGAGGCGGGGAGATCACAAGGTCAGGAGATCGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTGTTGGCACACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTACTTTAACCTGCGGGGGGAGCCTAGATTGCGCTACTGCACTCCAGCCTAGGCAACAGAGGGAGACTCTGTCTCATTAAAAAAAAAAAAAAAAAAAAAAAAAGGCCGGGCTTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACAGTGAAACCCTGTCTCTACTAAAAACACAAAAAATTAGTCGGGCGTGGTGGTGGGCGCCTGTGGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCGCTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAATATCCCTTTTGTTGTGTTTGAATGCCACCTTTCAGTCTTCTTCCTTAAGAATGTTAGGAAGGGGCTTTGCAAACCTCTAGTGGCAACAGTCTTCCTTCCCTTCTTCCTACCACGTTGGAAATGCAGGACTCATGTCAGTCAGCATGTGACCGAGTCTTTCATGAACACTTTGCTCCTCTATGTCTCATTTATGCAAAATTCCTGGTGACTCTCCACTAACATTTTTAAAGTGAAAGCAAACTTTCACTTTAAAAAAAGTGAGCGAGAGGATCCCTTGAGCCCAGGAGTTCAAGGCCAGTCTGGGCAACATAGCAAGACCCCATCCCTAAAAAAAAAAAAATAAGTTTTATTAAATGTGGCACTTTCCCCTAGAAGGGCAGTAACCCCAGGAACCAGTCTGCCTCTTTTCGAATAAAGGAGACTTTTTAAAAAGAAAAAATTTCTTTTTAGGGTGGGGTGCTCTTTATCTAGCATCTTTCCTTCCTCCTTCTCTCTGCAAAATTCAACATTCATGACAGAGGGCCACACCAACCACGGGTTTATAGAGAGAGGAACTGAACAGCTGTTGATTCCCATCTGGAATATATTTAATGTTTGCCTGCTTGTGGAGCATGGTATTTAAAGGGTGTGGATGGATGAATGTTTAAAAAAAAACACACAAAACTATGCACAAGCTGTATGAGAGATGGCTAGGTCCATCTATGATTTTTTTTAAAAGAAGAATTTTAATACCTTTTCTTTGACAGTGAACTGTATTTAGAAATATGATCTTTATTGTGAAATGCTCATAAAATGCAACCAAACTGCATGTTTGGCCATAGGCTAGAATAATATATTAAAAGAATTAATGGAAAGTAGTATTGTCTGGGTTTCATGAAACTATTCCAGATAATATTCTCCAGCAAAACTTATGGTAACCTGTATTTTATAATGTCAATCTGCTGGACCAAGTTAATTTAGAAAATAATTTTTAATCCTCAGATTTTCAAAACTTGGACTACTGCAAGACTGATATGTACTTTTTATGCCCAAATCATATTTTTCAAAGATAGGACATCATAAGGCATCATTATTTCTAATGTATCTTTTAACTAGATAGAAAAAGCTTTACTGTCTAAACAGGACTTCTGCTCAAAACCTAATGGGAAAGCTATTTCTGGGGTAAGATTTGTAACAGTGCTTCTAGGTCATTTCATGTTTTATAGGGAAAAAGATCTTTGTACACCTCCTCAACCTGTTAGTAGAAATGTTGACTTCGATTTTTTGCACCCTCTTCACAGGACCTCATAAGTTGCCTCTGTTCTTGGAAAGCAATGGGAATAAAAATATGCTGTTGAAAATAGTGCATGGGGCCAGGCACAGTGGTTATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGCGGGCGCATCATGAGGTCAGGAGATCAAGACCATCCTGACCAACACGTGGTGAAACCCCATCTCTACTAAAATAAATAAAAAAAAAAATTAGCCAGGCGTGGTGGTGCACGCCTGTAGTCTCAGCTACTCGGGAAGCTGAGACACAAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGCGCCACTGCACTCCAGCCTGGCTACAGAGTGAGACTCCGTCTCGAAAAAAGAAAATAGTACATGGAGGGCATGCATTTTAGTTTAGGAAACCCCCCTCCCTTCCCAGTTCCAGAGGGAGAAATTATAAGCTATACTGTGCCAAAAGTGAGTGGGGCTGCAGAGAGAATGGTGCCTTTTCTCACCTTCTGAGTTAATGCCCGACATCTGCCATTGGATTCATTGACCAAAGGAAGTCATTTCTACTGTATAAACTCAGGAGTATCATAGCCCAACAAGTAAATAATAAATGTTCATTGGTTTTGGAAGGAAGGAAAGGTGAGTATTACCCCACCAAATACCAGCGAAGAGCACCCTGGCTTTGGCCATCTTTCCAAGGTTCATAATTGCTGTGGGCCTGGTGAGCCCTGTTCCCAGGTATGCAAGGGAGGGCTTCTCCAGGCCAGACATTTCTGTAGGTTTTCAGGTAGCAACTCCCCCATCATATTTTGGGTGTCATTCCCCACTCTCTCTCCCCACTTCTCAGCCTGTGCCCCAGAAACAACCACAGCAGCCTCATTCTGCAGACTTAACATCTGTCAAATAACCTTCCTGAAAAGGAAAGTTATTGGAGGAATCCAGGCCAAACAACAAGTAGAATAGAGCCATCTAAAGTTATTAATAATGAGTTCAGGGAAATAGATGAATTTTTTCCTGGCATAGTCAATATTTATATCTCACAACAAGTCAAAAATAATTTTCCATTTGGAAAACAAAACACACCATGACTGTAATTGTTAAGGCATATAATCATGAACTTCACATGCTCCCTCAACAAACGTTACTGCTCTAGGGAAATCATAGAAAAGGACCCTCTTACTCCCCAGGGGATCAAAGCAAGTCCCCTTAGGAATTTCATGTGTGCCGTGGGTCTGTTTTTATTTCACAGTGACTAGTCATATACTGGAGTAGCTCTGTTGTTCATTATTTGTAACAGGTCCATGTAACAGTCAAGTTAGCATTCAAGCAATTATGGATGTGATACTATGATGTACTTTTGTTATGATTGTATATGCTTAATAACAAAGTTATTTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183287:ENST00000439986:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.974
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(28.2=100)
A:
NA
C2:
PF0139113=Collagen=PD(12.8=6.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development