MmuALTD0011930-3/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:108063483-108064027:-
Coord C1 exon
chr9:108063921-108064027
Coord A exon
chr9:108063903-108063920
Coord C2 exon
chr9:108063483-108063681
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
ACCCCCTTTCTCTACCACAGCGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
ATGACCTTGCTTCCAAAGCCAACATCGTGATCGACCCCCTGGAGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATGAAGAGCCTGCCCCCTCAGCGGCCCAG
Seq A exon
GTGTGGCAGGAGGGACAG
Seq C2 exon
CGTCCGATGCAAGCCCTGGCCATCGGAGGGGCACTGCCCCTGCCCCGGCCAGGCTGGCTCAGTTCTCCAACCCTGGGCAGAGCCAACCGCTTCCTCAGCACGGCAGCTGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTCAAAGTTCGCTCACTGAATGTGGAACAGAGGACCCGTGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-52-59,53-59,54-59,55-59-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.474 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGGATGAAGAGCCTGCC
R:
AGGGTTGGAGAACTGAGCCAG
Band lengths:
110-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types