MmuEX6091631 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118066287-118067672:-
Coord C1 exon
chr11:118067511-118067672
Coord A exon
chr11:118066891-118067055
Coord C2 exon
chr11:118066287-118066478
Length
165 bp
Sequences
Splice sites
3' ss Seq
AGCATCTTGTCTTGGCCCAGGAT
3' ss Score
4.66
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGCATCTTATTCTCCACAGCAGAGATTCTGAAAACCCCGCTGGACCTCGTCCGCCTTTGGCTGCATGAGGCTGAGCGAGTGTATGGGGACAAGATGGTTGATGAGAAAGACCAGGAGACGCTGCACAGGGTCACCATAGCATCTGTCAAGAAATTCTTTGAC
Seq A exon
GATCTTGGGGAGGAGAATCTCTTTGCCAAACCCAACATCTTCTGCCACTTTACGCAAGGAATCGGTGACCCCAAGTACTTCCCCGTCACGGATGTGGCACAACTGAACAAGCTGCTGAAGGACGTCCTGGACAGTTACAACGAGGTTAACGCAGTCATGAACCTG
Seq C2 exon
GTGCTGTTTGAGGATGCGGTGGCTCACATCTGCAAGATCAACCGTATCCTGGAGTCTCCTCGGGGAAATGCCCTGTTGGTGGGCGTGGGTGGCAGTGGGAAGCAGAGCCTCTCGCGCCTAGCCGCCTACATCAGTGCCCTGGACGTCTTCCAGATCACACTCAAGAAAGGCTACGCAATCCCAGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'68-71,'68-70,69-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(3.4=16.4)
C2:
PF127802=AAA_8=FE(23.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGAAAACCCCGCTGGAC
R:
GAGAGGCTCTGCTTCCCACT
Band lengths:
251-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types