RnoINT0153344 @ rn6
Intron Retention
Gene
ENSRNOG00000016397 | Tmprss13
Description
transmembrane serine protease 13 [Source:RGD Symbol;Acc:1310872]
Coordinates
chr8:49639443-49640461:+
Coord C1 exon
chr8:49639443-49639535
Coord A exon
chr8:49639536-49640417
Coord C2 exon
chr8:49640418-49640461
Length
882 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CTTTGTGCCTCACACTGCAGGTC
3' ss Score
9.55
Exon sequences
Seq C1 exon
TGCCTACCGAACAACTGAGGTGGCCCATAGGGACGTCACCAGCAGCTTCTTACTCTCCGAATACAACTCCACCATCCAGGAAAGCCTCACCAG
Seq A exon
GTGCAGTGGAACAACCCAACTGTCTGTGTGCAAACAGGACTGAGGGACCAGTAGACGGTGCTTAGAGTCGGGTAGTCACTCTCTCATGTTTCCCTGGGACCCAGACTCCAAGGCCCCCTTGCAGTGCCAGCAGCACTATGGATGCCTTGGGGTTAAAAGCTCTTGTCTGAGATCTGGTGCGGAGATCACCCCAAAGTTGGATAGAGGTGATCCTGCCTCCTAGTCTCTAAATGCAACTAAGACACCTTGGGCTTCCTGAGAGCTAGGTGTTTGGATTAAAAGGCTCCGCCTGATGGACTTAGAGCAGGAAGATGCATCACTAGGGACCGGAGCAGGGGACTGACAGTTACTAGTGGTGAGGGCCCAGGAGGTCCATCTGAGGAAGCCTCAGTCCTTCCTGCCATCTTTGCACTGCAGTGTCTCTCTGTCCCAGCTCCCCCTGAAGGTGGAAGGCAGTCTTCCAGCCTTGCTTTACTAATGTGAGGGTGAGAGACAAAGCAAGCCTCCAGTTAAGAGCTGATCCCTCGGCACCTGCCTTGGTCCCAGCCCTCTGCATGCTACATTGAGGAGCATGAGGTTGTAGAAGAGGCTCGTGAGGATGGGAAGAGCTGGACCCATGAAGGCTTGCCTGGGTTCCAAGAACAGGGGACTCATGGGTGTGCATGGTTCACCATATCAAAACTGGGAGGAGACGGGAAATGTGAGGGAGATAGTTTGCTCGCATCCACCTTCCTGGAGAAAGCCCTGTAAGGAAGACCATCCTACTGGGAGAGGGCTCTCTGCTATTGTTAAAGGTGGAAATGGGACAGGGCCTGAGCAGGTGCCAGTCAGGAAAAGGAGGCAGCTGCTGTCCTTTCTCACCCTTTGTGCCTCACACTGCAG
Seq C2 exon
GTCGGAATGTCCTTCCCGGCGATACGTCTCCCTCCAGTGTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016397:ENSRNOT00000021949:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(34.1=100)
A:
NA
C2:
PF154941=SRCR_2=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]