BtaALTA0000135-1/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MPL6]
Coordinates
chr23:28333419-28334072:-
Coord C1 exon
chr23:28334000-28334072
Coord A exon
NA
Coord C2 exon
chr23:28333419-28333688
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCACCCCTCCCCGCCCCCAGCCT
3' ss Score
8.2
Exon sequences
Seq C1 exon
ATGCGAGTCATGGGGCCGCGAACCCTCCTCCAGCTGCTCTCGGGGATCCTGGTCCTGATCGAGACCCTGGCTG
Seq A exon
NA
Seq C2 exon
CCTTCCACTCCCTGAGGTATTTCTACACCGCCGTGTCCCGGCCCGGCCTCGGGGAGCCCCGCTTCATCATCGTCGGCTACGTGGACGACACGGAGTTCGTGCGGTTCGACAGCGACGCCCCGGATCCGAGGATGGAGCCGCGGGCGCGGTGGGTGGAGCAGGAGGGGCCCGAGTATTGGGATCAGGAGACGCGAAAGGCCAAGGACGCCGCACAGACTTTCCGGGCGAACCTGAACAGCCTGCGCGGCTACTACAACCAGAGCGAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005146-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(0.1=0.0)
A:
NA
C2:
PF0012913=MHC_I=PU(50.6=98.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGGTCCTGATCGAGACC
R:
GTTCGCCCGGAAAGTCTGTG
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development