Downloads

From VastDB

From this page you can download tables with the information in VastDB. Tables are split by species, and tables with different features of the database can be downloaded separately:

General files

  • EVENT CONSERVATION table - Information about the evolutionary conservation for all AS events for all pairwise species comparisons.
  • GENE ORTHOLOGY table - Information about the orthology relationshipts for all pairwise species comparisons.


Homo sapiens (hg38)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Homo sapiens (hg19)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Mus musculus (mm10)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Mus musculus (mm9)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Bos taurus (bosTau6)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Gallus gallus (galGal4)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Gallus gallus (galGal3)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Danio rerio (danRer10)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.


Drosophila melanogaster (dm6)

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENE INFORMATION - Information about gene names, descriptions, genomic coordinates and biotypes.
  • MAIN EXPRESSION TABLE - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
  • EVENT_ID to GENE_ID - Table relating genes to AS events.
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG FILE - Config file with sample information used for the plot in the main panel.