BtaALTA0000366-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MZQ5]
Coordinates
chr23:27689780-27690497:+
Coord C1 exon
chr23:27689780-27690049
Coord A exon
chr23:27690222-27690335
Coord C2 exon
chr23:27690336-27690497
Length
114 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGGTGGTCGGGGCGGGTCAGGGT
3' ss Score
-2.39
Exon sequences
Seq C1 exon
GCTCCCACTCCCTGAGCTATTTCTGCACGTGCGTGTCCCGGCCCGGCCTCGGGGAGCCGCGTTTCTTTGCCGTCGGCTACGTGGACGACACACAGTTCGCGCGGTTCGACAGCGACGCCCCGAATCCGAGAATGGAGCCGCGGGCGCCTTGGATGGAGCAGGAGGGGCCGGAATATTGGGAAGCGATGACAAGAGATGCCAAGAAAGCTCAACAGAGATTGCGAACGGGCTTGAACACCTTACGCGGTTTCTACAATCAGAGCGAGGCCG
Seq A exon
GGTCTCACACCCTCCAGTGGGTGTTTGGCTGCGACGTGGGGCCGGAGGGGCGCCTCCTCCGCGGGATCTGGCAGAACGCCTATGACGGTGCGGATTACCTCGCCCTGAACGAAG
Seq C2 exon
ACCTGCGCTCCTGGACCGCGGCGAACACGGTGGCTCAGATCACCAAGCGCAAGTGGGAAACCTCCGGGGAGGCAGAGTTCCAACGGAACTACCTGGAGGTCAAGTGCGTGCAGTGGCTCCTCAGACACCTGGAGACAGGAAAGGACACGTTGCTGCGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012208-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.3=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGAATATTGGGAAGCGAT
R:
ACGTGTCCTTTCCTGTCTCCA
Band lengths:
254-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development