BtaALTA0000696-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BFN5]
Coordinates
chr16:5517807-5518518:-
Coord C1 exon
chr16:5518336-5518518
Coord A exon
chr16:5517908-5517909
Coord C2 exon
chr16:5517807-5517907
Length
2 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAT
5' ss Score
4.36
3' ss Seq
TTTATTTTCTTTAATTTTAGAGG
3' ss Score
8.45
Exon sequences
Seq C1 exon
TCTCTCAAGGAAAATGTGGGCCTCCTCCACCAATAGACAATGGAGAAATTACCTCACTCCTGCAATCAGTATATCCTCCAGGAATGATTGTTGAGTACCGGTGTCAGGCCTACTATGAACTTCAGGGAAACAGAAAAGTAGTATGTCGGAATGGAAAGTGGTCACAACCACCAAAATGCTTAG
Seq A exon
AG
Seq C2 exon
GCATGTCTAATTTCAGAAGAAACAATGAGAAAACATCACATAGAGTTAAGATGGAAATACGATAAAAAACTTTACTCTAAAACAGAGGATACTATTGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023177-14-16,14-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTACTATGAACTTCAGGGA
R:
ATTGTTTCTTCTGAAATTAGACATGC
Band lengths:
104-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development