BtaALTA0000803-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100191692-100193142:-
Coord C1 exon
chr5:100193049-100193142
Coord A exon
chr5:100191834-100191896
Coord C2 exon
chr5:100191692-100191833
Length
63 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GAGCACTTTATCCCTTACAGTTT
3' ss Score
6.32
Exon sequences
Seq C1 exon
CCCAGTTTCTGATTCTGTGCCAACTTACCAGGTCCTGCTTCCTCAGACTTACACAAACTAATTTGTAGCACAAGGAATTCCCTCCTCATTTCAG
Seq A exon
TTTTTTTCCTATATAAAGATGGATGAAGAACCCATAATTTATAGTATTACTACTCTAAACCAG
Seq C2 exon
GATTTTCAGCAGAGGCATACACCAAAAAATATTAAGCATAAATTGGATCCTAATGAATTGCCATTAACCAAGAAGAAGCTGAAACACCAGAAACCTTGTAAAAGACAGCACAAAAATATAGCAGAAGATGTCAATGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.286
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF054737=Herpes_UL45=PU(31.7=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCCTGCTTCCTCAGACT
R:
TCAGCTTCTTCTTGGTTAATGGCA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development