BtaALTA0000938-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B9A9]
Coordinates
chr18:58205070-58208436:+
Coord C1 exon
chr18:58205070-58205162
Coord A exon
chr18:58208333-58208335
Coord C2 exon
chr18:58208336-58208436
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTTTTCTTCTCTTTCCTAGAAG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTTTTCAAGCAAGCACACCAGAGGTAGTCTCCAAATTGGATCAAGGAGAACCATGGATGATGGATGATGAAACCCACTGTCAAACCCGTTCAG
Seq A exon
AAG
Seq C2 exon
TCTGGAAATTTGATGACCACCTGCTGGAGTACTTACAAAATGAGAGCATGGAGAAGAGACTAGAACAATGGCATGAACAGAACCCACTAGAAAATGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037906-7-5,7-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGTCAAACCCGTTCAG
R:
TGGGTTCTGTTCATGCCATTGT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development