BtaALTA0001124-1/2 @ bosTau6
Alternative 3'ss
Description
NA
Coordinates
chr18:47871977-47873261:+
Coord C1 exon
chr18:47871977-47872103
Coord A exon
NA
Coord C2 exon
chr18:47873188-47873261
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TTCTTTTTTCTTTAAAGCAGGCC
3' ss Score
6.74
Exon sequences
Seq C1 exon
GGATCGTTGACATTCAGTGATGTGGCCATAGGATTCTCTCAGCAGGAGTGGGAATGCCTGGACCCTGTTCAGAAGACTTTGTACCGGGATGTGATGATGGAGAACTATGGTAACTTGGTCTCATTGG
Seq A exon
NA
Seq C2 exon
GCCATTCCATTTCTAAGCCAAATGTAATTACCTTACTGGAGCAAGGAAAAGAGCCCTGGCTAGTTGTGAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046367-3-4,3-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGGATGTGATGATGGAGA
R:
GGGCTCTTTTCCTTGCTCCAG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development