BtaALTA0001172-3/4 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MWX7]
Coordinates
chr11:106387987-106388645:-
Coord C1 exon
chr11:106388566-106388645
Coord A exon
chr11:106388062-106388088
Coord C2 exon
chr11:106387987-106388061
Length
27 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GTTTGGTTTATCCCAAGGAGGCA
3' ss Score
-15.09
Exon sequences
Seq C1 exon
CATGAACCTGTGCATGAAGGAGAAGAACCAGGCCGTGAAGGGGGACGCCCCCGGGAAGTTCAAGATCCCTTTAGAGTCTG
Seq A exon
GCAAAGAGGTCATCGTGGTGGCCACAG
Seq C2 exon
ACTACAAGACCTACGCCATCATGAACATCATCCTGAACAGAGGCGGGAAGCCCAGCAGCGTGCTGAAGCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047297-3-4,3-3,3-2,3-1-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(26.0=100),PF137151=DUF4480=FE(29.7=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(33.7=100),PF137151=DUF4480=FE(38.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGAAGAACCAGGCCG
R:
CCGCCTCTGTTCAGGATGATG
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development