BtaALTA0001174-2/3 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MT59]
Coordinates
chr18:57621549-57622795:-
Coord C1 exon
chr18:57622666-57622795
Coord A exon
chr18:57621628-57621644
Coord C2 exon
chr18:57621549-57621627
Length
17 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ACTCCTTTTCCTGATAGCAGGTC
3' ss Score
5.4
Exon sequences
Seq C1 exon
CAGGAATGGCTGATATTCCAGGATGTGGCCATAGACTTCACCCAAGAGGAGTGGGAATGCCTGGACCTCGATCAGCGGGAATTGTACAGGGACGTGATGTTAGAGAACTACAGGAACCTGGCCTCCTTGG
Seq A exon
GTCTTGTGGTCTCTAAG
Seq C2 exon
CTGGACCTGGTCACCTTTCTGGAGCAAATGAAGAATCCCTGGGATGTAAGGAGACTGGAGCCACCAGCCATATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047301-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGGAGTGGGAATGCCTG
R:
TCCAGAAAGGTGACCAGGTCC
Band lengths:
111-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development