BtaALTA0001305-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61999663-62000547:+
Coord C1 exon
chr19:61999663-61999783
Coord A exon
chr19:62000430-62000432
Coord C2 exon
chr19:62000433-62000547
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
3' ss Seq
TGCTCTCCCATGTTTTCTAGAAG
3' ss Score
8.08
Exon sequences
Seq C1 exon
AATCTCTCCAAGAAGAGGGGAATATCGTCCAAACCCAGAAGAACCGGAAGAAGAGGATGAAGACGTTCAAACGGAAAGGGTGAAAACGGCGAATGCACTCACTGCGTCCAGCTTGGATGAG
Seq A exon
AAG
Seq C2 exon
CCAGTAATAATGGCAAGCTGTTTACACAAGGAATATAAACAGGAAAAGAAAAGGTGCTTTTCAGCAAGAAAGACGAAAACAGCCGTTCGGAATGTTTCCTTCTGTATTAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-33-33,33-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(23.8=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGAAGAGGATGAAGACGT
R:
CCTTGTGTAAACAGCTTGCCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development