BtaALTA0001342-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62088091-62089479:+
Coord C1 exon
chr19:62088091-62088185
Coord A exon
NA
Coord C2 exon
chr19:62089364-62089479
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GTTGGGGCTCCTTCAGGCAGACG
3' ss Score
-0.21
Exon sequences
Seq C1 exon
CTGTGTTTTGTGCTGAGCCTCCTGGGAGACCCACCCATCCTGCTTCTGGATGAGCCGTCCACAGGCTTGGACCCCGCGGAGCAGAAGCAGCTGTG
Seq A exon
NA
Seq C2 exon
ACGGTCCAGAGAGCCGTTAGAAACACGGCGAGGGGCGCCCTGCTGACCACCCACTCCATGGCCGAGGCGGAGGCCGTGTGCGACCGCGTGGCCATCATGGTGTCCGGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-43-40,43-39-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.6=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCATCCTGCTTCTGGAT
R:
GCCGTGTTTCTAACGGCTCTC
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development