BtaALTA0001531-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012525 | ABO
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) [Source:HGNC Symbol;Acc:HGNC:79]
Coordinates
chr11:104243714-104244900:-
Coord C1 exon
chr11:104244853-104244900
Coord A exon
chr11:104243762-104243764
Coord C2 exon
chr11:104243714-104243761
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ACCGGGCTTTTCTGTCTCAGCAG
3' ss Score
6.8
Exon sequences
Seq C1 exon
CAACGTGTTCAGCCTGATCCCCAGAAGACAGACAGAAAAGTCTCAAAG
Seq A exon
CAG
Seq C2 exon
CCCTGAGGCCCACCACGTGCAGGGGCGACGGGAGAGCCTGACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012525-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(4.8=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGTGTTCAGCCTGATCCC
R:
TAAAGTCAGGCTCTCCCGTCG
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development