BtaALTA0001717-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010182 | ACR
Description
acrosin [Source:HGNC Symbol;Acc:HGNC:126]
Coordinates
chr5:120228228-120229232:+
Coord C1 exon
chr5:120228228-120228373
Coord A exon
NA
Coord C2 exon
chr5:120228896-120229232
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTCTGTATCCTTCTGGGCAGGGG
3' ss Score
7.06
Exon sequences
Seq C1 exon
CCCGCAGGACATCACCTGTGCTGCAGGAGGCGCATGTGGACCTTATCGACCTCGACTTGTGTAACTCGACCAGATGGTACAATGGGCGCATTCGTTCAACCAATGTGTGCGCAGGGTACCCTGAAGGCAAGATTGACACCTGCCAG
Seq A exon
NA
Seq C2 exon
GGGGACAGCGGCGGGCCTCTCATGTGCAAAGACAGCGTGGAAAACAGCTATGTGGTCGTGGGAATCACAAGCTGGGGGGTAGGCTGTGCCCGAGCTAAGCGCCCCGGAGTCTACACGTCTACCTGGTCCTATCTGAACTGGATTGCCTCCAAGATAGGCTCTAACACGGTGCACATGATTCAGTTGCCCACCGCTCCCCCTGCTTCTACTCCAGCAGCCCAAGCGAGCCCTGGCTCCGTTCAGCCTTCCATTCGCCCACCTTGGTTCTTCCAACACGTTCCTCAACCACCTCCCTCTCAGCAAGCTATTGCCGTGGCCTCAACCGCTCACGTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010182-5-4,5-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.354
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.3=41.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAATGGGCGCATTCGTTCA
R:
TCATGTGCACCGTGTTAGAGC
Band lengths:
247-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development