BtaALTA0001752-2/5 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001417 | ACSM1
Description
acyl-CoA synthetase medium-chain family member 1 [Source:HGNC Symbol;Acc:HGNC:18049]
Coordinates
chr25:18349702-18363079:+
Coord C1 exon
chr25:18349702-18349780
Coord A exon
chr25:18362876-18362895
Coord C2 exon
chr25:18362896-18363079
Length
20 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTCTGTGTCTGTTTCCTGAGGAC
3' ss Score
0.61
Exon sequences
Seq C1 exon
TGAACTTCTAATCAGAAGAGAACTGAACTTGCAACGTCCCCATCCAAGACATAACCAAGCGTTTCCTAGACAGTACCAG
Seq A exon
GACTGCTCCACTATGCAAAG
Seq C2 exon
GCTGATGAAGTTTCGGGTCCTCTGGGGCATCCACATGTCCTTCCCTGGCTTCCACCATGCCCCTCAGCACCTGCGCTGCCGATCTTTATCAGGAGCTGGAACCCTAAGATGGAATGACTATGACAGACCTGAGGAATTTAACTTTGCAAGTGATGTACTGGACCACTGGACTCAAATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001417-0-6,0-5,0-4,0-3,0-2-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.031
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTTGCAACGTCCCCATC
R:
CAGGGAAGGACATGTGGATGC
Band lengths:
103-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development