BtaALTA0001768-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006447 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr25:18639618-18641552:+
Coord C1 exon
chr25:18639618-18639697
Coord A exon
chr25:18641426-18641428
Coord C2 exon
chr25:18641429-18641552
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTCCTTATCTGTTTTCTGAGAAG
3' ss Score
-0.62
Exon sequences
Seq C1 exon
ACACTTTCCAAGTTTCCCATCACAGTCTTCTGTTCAGCACCAACTGCATACAGAATGCTTGTACAGAATGATAAGGCCAG
Seq A exon
AAG
Seq C2 exon
CTATAAGTTCAAGAGCTTGAAGCACTGTGTAAGTGCTGGGGAACCAATCAACCCTGAAGTGACTGAACAATGGAGAAACAGGACAGGTCTGGATATCTACGAAGGATATGGACAGACTGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006447-7-11,7-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(6.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTCTGTTCAGCACCAACTG
R:
GGTTCCCCAGCACTTACACAG
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development