BtaALTA0001801-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009696 | ACTN2
Description
Bos taurus actinin, alpha 2 (ACTN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034635]
Coordinates
chr28:9443121-9445209:+
Coord C1 exon
chr28:9443121-9443267
Coord A exon
chr28:9445144-9445149
Coord C2 exon
chr28:9445150-9445209
Length
6 bp
Sequences
Splice sites
5' ss Seq
AGGGTACCT
5' ss Score
4.24
3' ss Seq
TTCTTTCTTTTTGTTGAAAGAGG
3' ss Score
2.86
Exon sequences
Seq C1 exon
CACATTCGTGTGGGCTGGGAGCTGCTGCTGACGACTATCGCCAGAACCATCAACGAAGTGGAGACCCAGATCCTGACGAGAGATGCGAAGGGCATCACCCAGGAGCAGATGAATGAGTTCAGAGCCTCCTTCAACCACTTCGACAGG
Seq A exon
AGGAAG
Seq C2 exon
AATGGTCTAATGGATCATGAGGATTTCAGAGCCTGCCTGATCTCCATGGGTTATGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009696-26-32,26-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(20.2=42.9),PF138331=EF-hand_8=PU(15.4=20.4)
A:
NA
C2:
PF138331=EF-hand_8=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCAGGAGCAGATGAATGA
R:
TCAGGCAGGCTCTGAAATCCT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development