BtaALTA0002774-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017113 | ANKRD33
Description
ankyrin repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:13788]
Coordinates
chr5:28131786-28132817:-
Coord C1 exon
chr5:28132717-28132817
Coord A exon
chr5:28131912-28131915
Coord C2 exon
chr5:28131786-28131911
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTGAGCTGCCCCTCCTCCAGACA
3' ss Score
6.39
Exon sequences
Seq C1 exon
TCCGAGGTGTTTAAGGCAGCTTTTCCCGTTAAGTCGAGCCATCTGTTACCAGCATTGCTTCCTGGGGCGGATAGTCCACCTCGAGACACTCCAGAGACTCG
Seq A exon
ACAG
Seq C2 exon
GTCTCATGGTCGCCTGCTACCATGGTTTCCAAAGTGTGGTGGCCCTGCTCAGCCGCTGTCCTTTCCTGGATGTGAACCAGCAGGACAAAGAAGGGGACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017113-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=FE(43.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGAGCCATCTGTTACCAGC
R:
TTGGAAACCATGGTAGCAGGC
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development