BtaALTA0003257-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004190 | ARHGAP29
Description
Bos taurus Rho GTPase activating protein 29 (ARHGAP29), mRNA. [Source:RefSeq mRNA;Acc:NM_001102485]
Coordinates
chr3:49462926-49469047:+
Coord C1 exon
chr3:49462926-49463063
Coord A exon
chr3:49468815-49468850
Coord C2 exon
chr3:49468851-49469047
Length
36 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATATAATTTTATCTCTTTAGCTG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GGAATTTATCGTGTATGTGGGAACAAAATCAAAACTGAAAAACTGTGTCAAGCCTTGGAAAATGGAATGCACTTGGTAGACATTTCAGAATTTAGCTCACATGATATCTGTGATGTCTTAAAATTATACCTTCGACAG
Seq A exon
CTGCCAGAACCATTTATTTTATTTCGATTGTACAAG
Seq C2 exon
GAATTTATAGACCTTGCAGTAGAAATCCAACATGTAAATGAAGAACAGGAGATGAAAAAGGATAACCCTGAGGACAAAAAATGGCCAAGTTCATCTATAGAAATAAGCCGAATCCTCCTAAAAAGCAAGGACCTTCTAAGACAATTGCCAGCATCAAATTTTAACAGCCTTCATTACCTCATAGTTCATCTTAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004190-26-30,26-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.7=100)
A:
NA
C2:
PF0062022=RhoGAP=FE(44.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGAAAATGGAATGCACT
R:
TGTTGGATTTCTACTGCAAGGTCT
Band lengths:
119-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development