BtaALTA0003523-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74931633-74932172:-
Coord C1 exon
chr17:74931974-74932172
Coord A exon
NA
Coord C2 exon
chr17:74931633-74931701
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCGCGTCGCACGTGCTGCAGACC
3' ss Score
4.86
Exon sequences
Seq C1 exon
GGAGCTACGCCATGGCCGAGCTTGTGAGAAACGTGCGCAGCGCGCAGGCGCCCGCCCGGCCCGGTGTCCGCCTGGAGGAGGACACAGTGGTGGCCGTGCTCAACACGATCCACGAGATCGTGTCCGACAGTCTGGACAACGCGCGCTCGCTGCTGCAAGCTCGCGGCGTGCCCGCGCTGGTGGCACTGGGCGCCTCCAG
Seq A exon
NA
Seq C2 exon
ACCGTGTGGAGCTACAAGGAGCTGCGCAGCGCCCTCCAGAAGGACGGCTGGAGCAAGGCGCGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473-15-23,15-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCGACAGTCTGGACAAC
R:
CTTGCTCCAGCCGTCCTTCT
Band lengths:
137-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development