BtaALTA0003921-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43214086-43219944:+
Coord C1 exon
chr19:43214086-43214214
Coord A exon
NA
Coord C2 exon
chr19:43219862-43219944
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
CTGAATTGCATCATCAGCAGATG
3' ss Score
3.09
Exon sequences
Seq C1 exon
GCTAATTTTGAGAAGATTGAAAATGAACTGAAGGAAATCAACACAAACCAGGAAGCTCTGAAGAGAAATTTCCTAGAACTAACTGAATTAAAATTTATACTTCGCAAAACTCAACAGTTTTTTGATGAG
Seq A exon
NA
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCGTCCCTCTTGGAGCCAAGCGAGATGGGAAGAGGCACGCCCTTGAGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218-11-9,11-8,11-7-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(22.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAAGCTCTGAAGAGAA
R:
CTTCCAACAGGTCTGGATCCG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development