BtaALTA0004509-3/6 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000022590 | BOLA
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MWX3]
Coordinates
chr23:27863483-27864252:+
Coord C1 exon
chr23:27863483-27863752
Coord A exon
chr23:27864013-27864090
Coord C2 exon
chr23:27864091-27864252
Length
78 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGTGATGTTTGGCTGCGAAGTGG
3' ss Score
-1.27
Exon sequences
Seq C1 exon
GCTCCCACTCCCTGAGCTATTTCAACACCGGAGTGTACCAGCCCGGCCTCGGGGAGCCGCGATTCTTTGCCGTCGGCTACGTGGACGACACGCAGTTCGCGCGGTTCGACAGCGACGCCCCGAATCCGAGAATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGCCCGGAATATTGGGAAGAGATGACACGAGATGCCAAGGAAAGTCAACAGAAATCCCGATTATGCTTGTACAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG
Seq A exon
TGGGGCCGGACGGGCGCCTGCTCCGTGGATTCTGGCAGAAGGCCTACGACGGCAGAGATTACATCGCCCTGAACGAAG
Seq C2 exon
ACCTGCGCTCCTGGACCGCAGCGGACACGGTGGCTCAGATCACCAAGCGCAAGTGGGATGTCTCCGGGCAGGCAAAGATCCAACGGAACTACCTAGAGGTCAAGTGCGTGCAGTGGCTCCTCAGACACCTGGAGACGGGAAAGGACACGCTGCTGCGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022590-1-7,1-6,1-5,1-4,1-3,1-2-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.3=98.9)
A:
NA
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTTGTACAACCTGCGCG
R:
CGTCTCCAGGTGTCTGAGGAG
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development