BtaALTA0004510-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000022590 | BOLA
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MWX3]
Coordinates
chr23:27863977-27865129:+
Coord C1 exon
chr23:27863977-27864252
Coord A exon
chr23:27864791-27864942
Coord C2 exon
chr23:27864943-27865129
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATTATCTCGTCCATTCTCAGCAT
3' ss Score
6.36
Exon sequences
Seq C1 exon
AGTCTCACATCCTCCAGGTGATGTTTGGCTGCGAAGTGGGGCCGGACGGGCGCCTGCTCCGTGGATTCTGGCAGAAGGCCTACGACGGCAGAGATTACATCGCCCTGAACGAAGACCTGCGCTCCTGGACCGCAGCGGACACGGTGGCTCAGATCACCAAGCGCAAGTGGGATGTCTCCGGGCAGGCAAAGATCCAACGGAACTACCTAGAGGTCAAGTGCGTGCAGTGGCTCCTCAGACACCTGGAGACGGGAAAGGACACGCTGCTGCGCGCAG
Seq A exon
CATGGTCATGTGGTACTGCTTCAGAGGCCCATGGAGTGTGAATTTTCTGATTCTTCTCTTCAGACCCTCCAAAGACACATGTGGCCCATCACCGCATCTCTGACCGTGAGGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAG
Seq C2 exon
ATCACACTGACCTGGCAGCAAGACGGGGAAGACCTGACTCAGGACATGGAGCTTGTGGAGACCAGGCCTTCAGGGGATGGAACCTTCCAGAAGTGGGCGGCCCTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCGTGTGCAGCACGAGGGGCTTCAGGAGCCCCTCACCCTGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022590-2-11,2-10,2-8-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.2=94.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGATTACATCGCCCTG
R:
TCCACAAGCTCCATGTCCTGA
Band lengths:
249-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development