BtaALTA0005164-2/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009876 | C4BPA
Description
Bos taurus complement component 4 binding protein, alpha (C4BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_174252]
Coordinates
chr16:4785229-4795606:+
Coord C1 exon
chr16:4785229-4785434
Coord A exon
chr16:4795452-4795454
Coord C2 exon
chr16:4795455-4795606
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTCAAATTGAGTTCTTTCAGCAG
3' ss Score
0.34
Exon sequences
Seq C1 exon
TCTGCCCATCCATTTCTACCTGGCCGTCCCTGGACAGCCAACCACATGGCTGGAAGTGAGGGAATTTTTGGTGAGGCCAACTTCAGGGTGTTCTTGTAAACTCTTATCTGAGGAGGAACTAATGCTATTTCAGATCAAAGCAGTCTTCCTCCCTAAGAAACTACCCAAGGAACAATGATAGAGTCTTCTTCCTCGGCTGTCTGCAG
Seq A exon
CAG
Seq C2 exon
AAAAGTGTCAATGAAGCATCAGCGAGTTCCAGTTATGATCCTTCATAGCAAGGGGACAATGGCATCCTGGCCCTTCTCTAGGCTGTGGAGTATCTCTGATCCAATTCTGTTCCAAGTGACCTTGGTTGCTACTCTGTTGGCCACTGTTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009876-0-9,0-8,0-7,0-6-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTCTTCCTCGGCTGTCT
R:
CAGGATGCCATTGTCCCCTTG
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development