BtaALTA0005647-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006572 | CARD9
Description
Bos taurus caspase recruitment domain family, member 9 (CARD9), mRNA. [Source:RefSeq mRNA;Acc:NM_001077111]
Coordinates
chr11:103878499-103879033:-
Coord C1 exon
chr11:103878908-103879033
Coord A exon
NA
Coord C2 exon
chr11:103878499-103878540
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGC
5' ss Score
4.81
3' ss Seq
CCCCTATTCTGTGACCGCAGAGC
3' ss Score
7.33
Exon sequences
Seq C1 exon
CGGAAACAGGTCCGCGAGCTGAGTGAGAAGGTGGACGAGCTCCAGCTGCAGCTGTTCCAGCGCGAGGGCCAGTTGCTGGCCGTGGAGGGCAAGCTCCGGCGGCGGCAGCTAGACGCGCTCATCCTG
Seq A exon
NA
Seq C2 exon
AGCTCTGATCTAGAGGACAGCTCACCCAGGAATTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006572-11-12,11-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGGTGGACGAGCTCC
R:
GTGAGCTGTCCTCTAGATCAGA
Band lengths:
128-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development