BtaALTA0006330-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37935899-37936553:+
Coord C1 exon
chr29:37935899-37936165
Coord A exon
chr29:37936449-37936451
Coord C2 exon
chr29:37936452-37936553
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGGCTCTGGGGTTTTCCAGCAG
3' ss Score
5.88
Exon sequences
Seq C1 exon
GCCCAGGACTGGAAGAGGTGCATGCCTCCGAGGTCCCACCTGCCAACCTTGAACACTGCATTGCAAACCCTCCCTCCCTGGACCCTCCTCCTCCACATCCTCCAAGGAGCAAAAGCAGCTCCAGCACATCTTCGGGGGAGATGTACTGTAATAGCCCCAGCAGCAAGCGACCTCTGTGGAGCTCTCAAGTGTTTTCATCAGAGAGGAACCCCCTCCTGGAGCAGCCCCCCAACTTGGAGCTGGCTGGCTCCCAGGCAACTATTCCAG
Seq A exon
CAG
Seq C2 exon
GGCCCTCAGCTGATGACAGCTCCAGCACCTCCTCTGGCGAGTGGTACCAGAACTACCAGCGGCCGCCCCAGCCCCTTTCTGCTGAGCAGTTTGGATGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367-10-14,10-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTTGGAGCTGGCTGG
R:
TAGTTCTGGTACCACTCGCCA
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development