BtaALTA0006450-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43680539-43680869:-
Coord C1 exon
chr29:43680746-43680869
Coord A exon
NA
Coord C2 exon
chr29:43680539-43680624
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
3' ss Seq
TCATCCTGCTCCTGGAGCAGTGA
3' ss Score
2.59
Exon sequences
Seq C1 exon
GCTGCGGAAGTGAAGGGACGAGGTGCCCGCGGCTCTGGCCCGCAGCGGCCCCACAGCTTCTCCGAGGCCTCGCGGCGCCCAGTCTCCATGGGCAGTGACGGCCTCGCTAAAGATGCAGACCCCA
Seq A exon
NA
Seq C2 exon
TGAAGAGGAAGCCTTGGACATCTCTGTCCAGCGAGTCTGTGTCCTGCCCCCAGGGATCTCTGAGCCCTGCAGTCTCCCTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-43-48,43-47-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTAAAGATGCAGACCCC
R:
AGACTGCAGGGCTCAGAGATC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development