BtaALTA0006807-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62661045-62665464:+
Coord C1 exon
chr16:62661045-62661158
Coord A exon
chr16:62665318-62665324
Coord C2 exon
chr16:62665325-62665464
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ATATATCTTTTCTTTTTTAGGTA
3' ss Score
11.99
Exon sequences
Seq C1 exon
ATGATAGCTCTATGAAAGAAAAACCAGCTGAAAAAAGTAGAGAGAAGAAAGTGGTCAAGCCAGTACGAAAAGTCCAAAAGGTAGCACAGTTATCAAGTTCAGAATGTAAAACAG
Seq A exon
GTAGCAG
Seq C2 exon
TCATCTGATTAGTACATCGTCTTGGCGAGATGGACAAAAATTAGTAAAGAAAATTCTTGGTCCTGCACCTAGAATAGAGCAAAAAGAGCGAAGAGCAGCATCAAGTGACAGAAGTGGAAGAGAAAGAACTACTAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCAAGCCAGTACGAAAAGT
R:
TTTGTCCATCTCGCCAAGACG
Band lengths:
101-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development