BtaALTA0007121-1/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002252 | CHRNA2
Description
cholinergic receptor, nicotinic, alpha 2 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1956]
Coordinates
chr8:75874056-75879491:-
Coord C1 exon
chr8:75879382-75879491
Coord A exon
NA
Coord C2 exon
chr8:75874056-75874934
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGA
5' ss Score
4.46
3' ss Seq
TCTTCCCCTTCGACCAGCAGAAC
3' ss Score
6.19
Exon sequences
Seq C1 exon
GAGTGGAGCGACTACAAGCTGCGCTGGAACCCGGTCGATTTCGGCAACATCACATCCCTCCGCGTCCCTTCGGAGATGATCTGGATCCCAGACATAGTCCTCTACAACAA
Seq A exon
NA
Seq C2 exon
AACTGCAAGATGAAGTTTGGCTCCTGGTCGTACGACAAGGCCAAGATCGACCTGGTGCAGATGGAGCAGACGGTGGACCTGAAGGACTACTGGGAGAGCGGCGAGTGGGCCATCGTCAACGCCACGGGCACCTACAACACCAAGAAGTACGACTGCTGCGCCGAGGTCTACGCCGACGTCACCTACTACTTCGTCATCCGGCGCCTGCCCCTGTTCTACACCATCAACCTCATCATCCCTTGCCTGCTCATCTCCTGCCTCACCGTGCTCGTCTTCTACCTGCCCTCCGACTGCGGCGAGAAGATCACCCTGTGCATCTCTGTGCTGCTCTCACTCACCGTCTTCCTGCTGCTCATCACCGAGATCATCCCGTCCACCTCGCTGGTCATCCCGCTCATCAGCGAGTACCTGCTCTTCACCATGATCTTCGTCACCCTGTCCATTGTCATCACCGTCTTCGTGCTCAATGTCCACCACCGCTCCGCCAGCACCCACAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002252-7-9,7-8,7-7-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(17.4=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=PD(55.6=33.9),PF0293211=Neur_chan_memb=PU(86.7=63.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGAGCGACTACAAGCTG
R:
TTCTTGGTGTTGTAGGTGCCC
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development