BtaALTA0007320-3/5 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012815 | CLEC12A
Description
C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr5:100393744-100394706:+
Coord C1 exon
chr5:100393744-100393842
Coord A exon
chr5:100394535-100394612
Coord C2 exon
chr5:100394613-100394706
Length
78 bp
Sequences
Splice sites
5' ss Seq
TATGTATGT
5' ss Score
3.25
3' ss Seq
CGGATTTAAAAACTTTGAAGACA
3' ss Score
0.66
Exon sequences
Seq C1 exon
ACCCACCTGTTCCTTCCCACGTATGGCGTCAAGGAGCCTTGGCTCTGACTCTTCTGTGCCTTCTGCTGCTGATTGGCCTGGGCGTCTTTGGAGCCATAT
Seq A exon
ACAGGCATGGAAAAATTGAATAAGCTACAAAATTTCAAAGAAGAACTTCAAAGAAATATGTCTCTACAACTCATGCAG
Seq C2 exon
AACACAAATAGTTCCCAGAAAATCAGGAACCTTTCTATCAAACTTGAAGAAATAGCCACCAAATTATGTCGTGAGTTATATACAAAAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012815-3-8,3-7,3-6,3-5,3-4-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137861=DUF4179=PU(39.5=88.2),PF083915=Ly49=PU(22.2=82.4)
A:
NA
C2:
PF137861=DUF4179=PD(59.2=78.9),PF083915=Ly49=FE(44.4=100),PF074328=Hc1=PU(84.6=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCTTCCCACGTATGGC
R:
ACTCACGACATAATTTGGTGGCT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development