BtaALTA0007322-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004293 | CLEC12B
Description
C-type lectin domain family 12, member B [Source:HGNC Symbol;Acc:HGNC:31966]
Coordinates
chr5:100371291-100372173:+
Coord C1 exon
chr5:100371291-100371509
Coord A exon
chr5:100372019-100372084
Coord C2 exon
chr5:100372085-100372173
Length
66 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
GGGTGTAATTTCTTTTTCAGACC
3' ss Score
8.59
Exon sequences
Seq C1 exon
TTTTGCAGATGTCCAGCGAAATTAACTCAGATTCAGACAAACTGACTCAACTCCAGAAAATCATCCACCAACAGCAGGACAACTTATCCCAGCAGCTGAGCAAGTACAGGAACTTTCCTGTGGAGGAGGAATTTCTCAAATCACAAATCTCCAGTCTATTGAAGAGGCAGGGACAAATGGCCATCAAACTCTGCCAAGAGCTAATCATTCATACTTCAG
Seq A exon
ACCACAAATGCAATCCTTGTCCTAAGACCTGGAAATGGTACCAAACCAGCTGCTATTATTTTGCAG
Seq C2 exon
TAAATGAGGAAAAAACCTGGCCTAACAGTAGAAAAAACTGCATGGACAAGAACTCCACGCTGGTGAAGATAGACAGCCTAGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004293-2-4,2-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(59.8=100)
A:
NA
C2:
PF083915=Ly49=PD(16.4=38.5),PF0005916=Lectin_C=PU(25.7=51.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGGAGGAGGAATTTCTCA
R:
TTCACCAGCGTGGAGTTCTTG
Band lengths:
171-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development