BtaALTA0007367-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15422624-15424707:+
Coord C1 exon
chr3:15422624-15422898
Coord A exon
chr3:15424538-15424554
Coord C2 exon
chr3:15424555-15424707
Length
17 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TCCTTTCCCTATCCTTACAGATG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GGCGGATCGGAGAGGCCAGAGCCGGAGACCGAGCAGGGATCGGGCCCCGGGCGGGGGCGGTGCGAGCGGCGCCAAGCGAATCCTGGGGGCGGGGACGGAGCCGGGGCGGGAGGGACTGGAGCGGAGCCCGGGAACTAGGCGGGAGGTCCCAGGGTCTCGGGTTGGGGGGGTGGAGCCGCACTTCGTCGCCGCGGGGGTGCCGGGACTCCGGCCGCAGTGCCGCCGCCATCACGGACTTCCTGTGGGACAAGCGCACGGGCCTCGCCGCCAGAACG
Seq A exon
ATGCCTCATCCTCGAAG
Seq C2 exon
GTACCACTCTTCTGAGAGAGGCAGCAGAGGGAGTTACCACGAGCATTATCGGAGCCGAAAGCATAAGCGACGAAGAAGCCGCTCCTGGTCAAGCAGCAGTGACCGTACGCGGCGGCGCCGACGGGAAGACAGTTACCATGTCCGTTCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393-4-2,4-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACGGACTTCCTGTGGGA
R:
GCTTATGCTTTCGGCTCCGAT
Band lengths:
117-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development