BtaALTA0007616-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112448015-112449338:+
Coord C1 exon
chr8:112448015-112448168
Coord A exon
NA
Coord C2 exon
chr8:112449183-112449338
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTCTGTCTTGCTTAGGCCAGATA
3' ss Score
1.76
Exon sequences
Seq C1 exon
TGCCATATGAAGGCTCAGAAAAGGGGTAAAGAACAACAATTTGACATTATGAACAAGCAGTACAAACAGCTTGAGAGCCGTTTGGACGAAATACTTTCTAGAATTGCTAAAGAAACTGAAGAGATTAAGGACCTTGAACAACAGCTTACTGAAG
Seq A exon
NA
Seq C2 exon
ATAGCAGCAAATGAAGCCCTGAAGAAGGACTTAGAAGGCGTCATCAGTGGGCTGCAGGAATACCTGGGGACTGTGAAGGGCCAGGCCGCGCAGGCCCAGAACGAGTGCAGAAGGCTGCAGGATGAGAAAGAGGCGCTGCTGCAGAGCTTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-14-18,14-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF138511=GAS=PU(35.9=71.2)
A:
NA
C2:
PF138511=GAS=PD(63.1=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACCTTGAACAACAGCTT
R:
CCCTTCACAGTCCCCAGGTAT
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development