BtaALTA0007617-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112460810-112461734:+
Coord C1 exon
chr8:112460810-112460955
Coord A exon
chr8:112461547-112461598
Coord C2 exon
chr8:112461599-112461734
Length
52 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
TCTTTCCTCTCCCCCCTTAGCAG
3' ss Score
8.57
Exon sequences
Seq C1 exon
GATGACAATAACCTGTTAAAACAGCAACTTAAAGATTTCCAGAATCACCTTAATCATGTAGCTGATGGTCTGATTCGTCCAGAAGAAGTGGCAGCTCGTGTAGATGAAGTAAGGAGAAAATTGAAATCAGGAGCTGGAGAGATGAG
Seq A exon
CAGAATCCACAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGACTTGCAG
Seq C2 exon
ATACAATTCAGTGAAATGCTGACACGTTCTCAGTGGGAGAAAGAGGAAGCCCAAGGGAGGGAAAGAAAACTCCAAGAAGAAATGGCTCTGCATCAGGAGAAGCTGGCGGACGGACAGGAAGCATTCAGGCAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-20-25,20-24,20-23-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.414
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGAAGAAGTGGCAGCTC
R:
TTCTTTCCCTCCCTTGGGCTT
Band lengths:
137-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development