BtaALTA0007618-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112462429-112464883:+
Coord C1 exon
chr8:112462429-112462608
Coord A exon
chr8:112464704-112464706
Coord C2 exon
chr8:112464707-112464883
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GTCTTTTTTTTTTATCTCAGAAG
3' ss Score
7.69
Exon sequences
Seq C1 exon
ATTAATTTTGACAAGAGGCAACATGAAGCAAGAATTCAGCAGTTAGAGAATGAGATTCACTATTTACAAGAAAATCTGAAAAGTATGGAGGAAATCCAAGGGCTTACAGATCTGCAACTGCAGGAAGCTGATGAAGAGAAGGAGAGAATTCTAGCCCAACTCCAGGAGTTAGAGAAGAAG
Seq A exon
AAG
Seq C2 exon
AAACTTGAAGATGCTAAATCTCAGGCGCAGGTTCTGGGTTTAGATAAAGAATTGAAGAAACTAAAGAAGGCTGTGGCCGCCTCTGATAAGATAGCCACGGCTGAGCTCACCATCGCCAAAGACCAGCTCAAGTCCCTTCATGGAACTGTTATGAAAATTAACCAGGAGCGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-23-28,23-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGCAGGAAGCTGATGA
R:
AACCTGCGCCTGAGATTTAGC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development