BtaALTA0007623-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112481284-112485113:+
Coord C1 exon
chr8:112481284-112481501
Coord A exon
chr8:112484964-112484966
Coord C2 exon
chr8:112484967-112485113
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
CTTGTATCGTAGGGTCTTAGCAG
3' ss Score
-4.42
Exon sequences
Seq C1 exon
GAGAAACTGCAGTTGGAGAATTTGCAGCAGACAGCCCTGCGACAGAAAGGGGAGATGGAGTGGCAGAAGCAGGTCTTAGAGAGGGACAAGCGCGAGACTGAGCGGGTAACTGCTGAGGCCCGAGCGTCGCGGCTGTGTGTTGAATCTTTGTGCAAACAAAAGGAAGATCTCGAGGAGAAATGTGACAGCTGGGAGAGGAAGCTGGCACAGACCAAACG
Seq A exon
CAG
Seq C2 exon
CCACAGAAGAGAATAGCAAAGCAAAGCAGTCAGACTTAGAAAAGTTGGAATTGGATATCAGAAAACTGGAACAGGAGCTAGACCAGCTAAACAGAAGCAAAGTCTCCCTGCACAGAGACGTCACGGCCGTGCAGCAGCAGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-43-53,43-52,43-51-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACAAAAGGAAGATCTCGAGG
R:
AGTCTGACTGCTTTGCTTTGCT
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development